Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01470 ATGTGGGCCATCAAAGAGTGGAAAAGGCACGAGCTGGCAAACAGATTAGATCAATTGGTTTCTGTTAAGGCAATACAACTGGCATCTGGAGAAGAGGCATCTAGAAGAGCTCTAAGATATCTATTGGCTAATAATTCTGCAAATAATTCTTCTTTTATTGGTGTCAATAATCGTAGTATTGTAAAAGGATCAAGAACCACAAGAGTTCAATCAATTCATGAACTTATCAATCTTCGCCAACTTCGTGGAAACACAAACACTGCCAATACTTCTAGTCACGGTGATGGCGGTGATCATCACTATCCTGCTCCTATTATATTACCATCAACTACTACTATTAACAATTATAATGATAATCATGCTTCTTCTTTTTCCTCTTTCCTACCTGCAAGACCTTTTGGATCAACTTTGACCACTATCAATAGAAATAACAACATGTCGTCATTATTAGGTTTATCATCCATGTTATATCCAAATATTGGAGGACAACGTGCAAGACTTGTGGCTCTATCTAATAACAACAATCGAAGTGGTGGAGCTGCAGGAAACAGTAGCAATAATAGTAATCCTATTTTGAATAATGGTAGAATTAATAATAATGTTGCTACTAATGTTGCTGCTTCTATTAGTAATGATGACCTTGGGCGCTCTTTGTCCTTAAAGAGAAGTAGATCACCTGATCGATTCTTAAGAGGAGGTAGTTCTAGTCAAGGTTCACAAGATGCTAGAACCTCTAGCAGAAGGCGGATAATTCCTCATATTTGTCCTCATCAAGACAATCACAACATGTCTTTAACTTCATCAACATCGCAGAGGTACTATAGCGGTAATAATGTCATTTCTAATATGTTGAACCAAAACATGATGAACCAAGCTATTGTTGCAAGTGTAGGACCAAGTAGTACTAGCACTACTCAATCTCACATCAATAGTCTTCTAGAAAGTCGTGGTCAAGCAGGTATTGTTGGTGATCTAACATATCAGTCTAATTATACTAATGAGCCAATTGATATTAATCGCTTTTTGTTCCCACCTCGACAAGACCATCCTTCGAATAACTTCATCAGTAGAAGATATGATGTTCCAGCTGCCTCTGCATCATCTTTTTATAGCTCTGCAACAACAAGAGGATCATTGGGAACAACTCAAGTTGCCACACCTTTTCAAATATACAACAATTTTATATCTTCTACAGCTGCTGGTAGTCGTTCTTCTTTTCGGAGCACGGGTTCAGGACAAAATCATAGTAATAATAACAACAACTTTAATTTCGTTGATAGTTTTCATCACGAAATTGATGATGTATTTGGTCGTAGCACAACAAATATTCAAGAACATGCAAGGGTATTGTCAAATGGTTGTGTGTATGGATTTGCAGCTCTGATTCCTGTTCTTGTGCGGCCTAGTAGTTCTGTACCACCGCAACGACCACTGTCGATTTCTAATCCTCCATCGAGCAATTACCGGCTACACAGTCCTCATGGACCATGGTTTAGTACTACTTTAGAAGTTGATCGACATGTGCATAGCAGTTCAACATTAACATTGACAAGACCACAGAATCAAGTTCGTCTTGGCGATCAAAACTACATTTTGGTTTCAAATTTTCATGAACTTATGGCAGAGAGGAACAGACTCAGGAGTGAGCTTAGCTCCCTACAACAATTTCGCAATGAGCTGACGGCTCGTTTAAGAAGGGTCAATTATGGACTGACGGAGGAACAGATCCTCACATTCATTCAACAAGAAACGTTTCAAACAAGTCCTGAAGAGACCAACACACAAAATCAAACCTGCATCATGTGTCAGGAAGACTTTGTGGATGGAGAGCAAATAGGAAGAATACATTGTAGGCACATATATCACCTTAACTGTATCAAGCAATAG 1887 0.3853 MWAIKEWKRHELANRLDQLVSVKAIQLASGEEASRRALRYLLANNSANNSSFIGVNNRSIVKGSRTTRVQSIHELINLRQLRGNTNTANTSSHGDGGDHHYPAPIILPSTTTINNYNDNHASSFSSFLPARPFGSTLTTINRNNNMSSLLGLSSMLYPNIGGQRARLVALSNNNNRSGGAAGNSSNNSNPILNNGRINNNVATNVAASISNDDLGRSLSLKRSRSPDRFLRGGSSSQGSQDARTSSRRRIIPHICPHQDNHNMSLTSSTSQRYYSGNNVISNMLNQNMMNQAIVASVGPSSTSTTQSHINSLLESRGQAGIVGDLTYQSNYTNEPIDINRFLFPPRQDHPSNNFISRRYDVPAASASSFYSSATTRGSLGTTQVATPFQIYNNFISSTAAGSRSSFRSTGSGQNHSNNNNNFNFVDSFHHEIDDVFGRSTTNIQEHARVLSNGCVYGFAALIPVLVRPSSSVPPQRPLSISNPPSSNYRLHSPHGPWFSTTLEVDRHVHSSSTLTLTRPQNQVRLGDQNYILVSNFHELMAERNRLRSELSSLQQFRNELTARLRRVNYGLTEEQILTFIQQETFQTSPEETNTQNQTCIMCQEDFVDGEQIGRIHCRHIYHLNCIKQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01470 628 CDD RING-H2 599 628 - -
Trre16g01470 628 MobiDBLite consensus disorder prediction 217 246 - -
Trre16g01470 628 SUPERFAMILY RING/U-box 580 627 - -
Trre16g01470 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 628 IPR013083 -
Trre16g01470 628 MobiDBLite consensus disorder prediction 229 245 - -
Trre16g01470 628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 174 628 IPR045191 GO:0061630
Trre16g01470 628 Coils Coil 543 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01470 Trre-Chr16 11540994 11547246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01470 560 628 C3H Transcription Factor Family AT2G15530 36.111 9.51e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01470 - - tpra:123896003 556.599