Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01466 ATGGCTCATTCACAACCACATAAACGTCGTAAACACAACAAAGACGTAACATTCACAACTCATTACACTCAACTTTCGTTGACAGCACGTGCACATTACCAAACACTGGTTGAGGAAGCGAGAATTTGTATTACTCAAAAGAACTATAAGGAATTCATAGTGCGTGTGCTTCCTAAAATCTACAAAATTTGTATACATTATAAAGTTCTCGTATATAAGTTTGAGGATGATCTTATTCCTGCACAATTTGAACAACAAGATGTTTCAACAAACCTCAATTTGCAATCAATCCTAACTAGGAGGGTACTGCAAGAAAAAGTTGAATGTTCAATTTGTCTATCTATTCCTTCTCATGCATTGATCACAAGATGTACTCATATTTTCTGCCAGAATTGCATTAGAAAATGGTTCGCTTGCGCCAGAAACCCCATCACATGTCCTTATTGTAGAAGTTCACTCACAATAGATGACATGTTCTCCGAAATAAGGCCAGCTACTAAGCTGGAAACTCTGATGCAACTTCTGCGAGAAGACACTTCTACCAAGTCAAAATCGGTCGTATTTTCATATTCTGACGGTGCACTTTACTATTTTCATATGCATTTGCATCGTGCTGGTTTTAATTGTCTTCTTTATATTACCAAAAGAATGAAATACTGTGAAAATAGTATCCAGAAATTTGAAAACAGTGATGGACCAGTAGTCTTGTTGGTAGACTTCGAGACTGCTCGCAAAAAACAAATTCTCATAAATGCTGAATGCAGAGTCTTTCTGTTAGATCCAACCAGAAAATCTATTGAAGAAGAGTTAGTGTCTCTTGTCACACAGCCGTTGTGTGTTTCAAGATTGATATCTCAAAACACAATTGAAGATGAAATACTCTCATTGAATGAGACGCTTACTGAAACCGACACTTCTGATTTATATGGCCACAAGGTCCTAAAATATTTACTGGATGAAGATTCTACGCGATGA 975 0.3672 MAHSQPHKRRKHNKDVTFTTHYTQLSLTARAHYQTLVEEARICITQKNYKEFIVRVLPKIYKICIHYKVLVYKFEDDLIPAQFEQQDVSTNLNLQSILTRRVLQEKVECSICLSIPSHALITRCTHIFCQNCIRKWFACARNPITCPYCRSSLTIDDMFSEIRPATKLETLMQLLREDTSTKSKSVVFSYSDGALYYFHMHLHRAGFNCLLYITKRMKYCENSIQKFENSDGPVVLLVDFETARKKQILINAECRVFLLDPTRKSIEEELVSLVTQPLCVSRLISQNTIEDEILSLNETLTETDTSDLYGHKVLKYLLDEDSTR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01466 324 SUPERFAMILY RING/U-box 102 176 - -
Trre16g01466 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 158 IPR013083 -
Trre16g01466 324 Gene3D - 16 263 IPR027417 -
Trre16g01466 324 SMART ring_2 109 149 IPR001841 -
Trre16g01466 324 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 300 - -
Trre16g01466 324 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Trre16g01466 324 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Trre16g01466 324 Pfam Zinc finger, C3HC4 type (RING finger) 106 152 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01466 17 298 RAD5 or RAD16-like Gene Family AT5G05130 28.221 8.08e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01466 K15711 - tpra:123893779 514.998