Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01439 ATGGGGAAGATAGAAAAAAAAAAAAACAAATCAAAAATAAAATTTACATTACCAAAACAACATAATAATAATTTTCTATCATCCTTGTCATCTTTGATGGCTATCCTCCTGGTTCTTCTTTTCGCCTTTTTTTCGCCTTCATACGCTCTTCCTTCGTCTCCAAGTTTCGTTCCAAAAGACAATTTTCTCATTGATTGTGGTGCTGAAAATGCACCTACTTTACCTGATGGTAGACAATTCAAATCAGATCAACAAGCAAGTTCATTCTTACAAGCTAATGATGATTTCAAAGTCTCAGCACCTGATGTTAATGTTCCTTTACCTATATATTCAAATGCTAGAATCTTTATTCAAGAAGCTAAGTATTCATTCCATTTGGTTGAACCTGGTTTTCATTGGATTCGCCTTCATTTCTATCCGATAAAAAACAATGTTTTCGATCTTCAAAAGGCGACGTTTTCTGTCAACACAGATGCTTTTGTTCTTCTTCATAGTTTCAATGTTAATAACACTGACAAAGCTATCCTTAAAGAGTATCTCATCAATGCAACAGAACCACAGTTTACATTATCATTCATTCCTTTGAAGAATTCGGCCGCATTTATCAATGCGATCGAGCTTGTTTCGGCTCCTCAAAACCTAATTTCCGATACCGGCTCAGGACTTTTCCCGGTTGCTGAGGTTAACGGATTAACAGCCTATGCTTTCCAGCCTGTGTATAGGTTAAACAACGGAGGACCTCTTATCACATCATCAAATGATACACTTGGAAGAACTTGGGAATCTGATGAACCTTATCTTACAAATAAGAATCTTGCAAAAAGTGTTTCTGTTGCTACTAATGTTATTAAGTTTCCTCAAGACACGCCAACAATTTCGCCTTTGATTGCTCCGCAAAGTGTTTATTCTTCTGCCACTGAAATGGGTGATGCTGGTGTTAATCTTCCAAATTTCAATGTATCATGGAAATTTGATGTTGACACTTCTTTTAGTTACCTTATTAGGTTGCATTTTTGTGACATTGTGAGTAAAGGTCTTAATCAACTTTACTTCAATGTTTATGTTAATAGCAAAATTGCAATTCCTAATTTGGATTTATCAGCTATAACTGGTGCATTGGCAACACCATATTACAAAGATTTTGTTGTCAATGCAACATTGATGACTCAAGGACTAACTGTTCAAGTTGGTCCTGCAAATGCTGATGGTGGAAATGCTAATGCAATTTTGAATGGTATTGAAGTTTTGAAGATAAGTAACACAGTGAATAGTTTGGATGGTGAGTTTGGTGTTGATGGAAGGAGACTTGGCGGTTCAAACCGAGGAACGGTTGCAGCGGTCGGTTTCGCTATGATGTTTGGAGCATTTGTTGGTCTTGGTGCTATGGTGATCAAGTGGCATAAGAGGCCTCAAGATTGGCAAAAGAGGAATAGTTTCTCTTCATGGTTGCTTCCTTTACACGCCGGCGACACAAGTTTCATGAGTAGTAAGACTTCAATGGGGAAAAGCAACATTTTCTCATCATCAATGGGATTAGGAAGGATTTTCTCCTTTGCTGAAATACAAGAAGCAACAAAGAATTTTGACTCCAAAAACATCATTGGTGTTGGTGGTTTTGGTAATGTTTATTTAGGTGTGATTGATGAAGGGACTCAAGTTGCTGTCAAGAGAGGAAATCCACAATCAGAACAAGGAATCAATGAATTCCAAACTGAAATCCAAATGTTGTCTAAGCTTAGACATAGACATTTGGTTTCGATGATTGGATATTGTGATGAGAATGATGAAATGATTCTTGTTTATGAGTACATGCCTAATGGTCATTTGAGGGATCATCTTTATGGAAAGAACATGCCTTCACTTTCTTGGAAACAAAGGTTAGAAATCTGCATTGGATCGGCGAGAGGTCTTCATTACCTTCACACTGGCACGGCGCAAGGTATCATTCATCGCGATGTTAAGACAACAAACATTTTACTTGATGAGAATTTCACAGCTAAGGTATCCGATTTTGGACTTTCGAAAGATGCGCCTATGGGACAAGGTCATGTAAGTACCGCGGTGAAAGGTAGTTTTGGTTATCTTGACCCTGAGTACTTCAGGAGACAACAATTGACCGAAAAGTCTGATGTTTACTCGTTCGGAGTAGTCCTACTCGAAGCACTATGCGCAAGGCCGGCTATTAACCCTCAGTTACCTAGAGAACAAGTTAACTTAGCAGATTGGGCTATGCAATGGAAGAGAAAGGGTTTACTTGATAAAATCATTGACCCTCAACTCGTCGGTTCGATTAATCCTGAATCTATGAAGAAATTTGCTGAGGCTGCTGAGAAATGTTTAGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGATGTTCTTTGGAATTTGGAGTATGCATTGCAGCTACAAGAAGCTTTCACACAAGGAAAAGCTGAAGATGAGAATGAGATTAAAGCTTCTGCTTCTGCTGCTGCTGCTGTTCCTACTTCACCTGCTCCTACTGCACCTGCCACTACTACTGATGACACCCCCCCAGTTGCTCATCAAGAAGTTAATACTAATAATACTAATAATAATACTAATAATACTACTAATAATAATAATAATAATGGTCCTGCTGAAGTTCAAGGTATTGATGACCATTCTGGAACTGCAATGTTTGCACAGTTTAGTAATCTTAATGGAAGGTAA 2694 0.382 MGKIEKKKNKSKIKFTLPKQHNNNFLSSLSSLMAILLVLLFAFFSPSYALPSSPSFVPKDNFLIDCGAENAPTLPDGRQFKSDQQASSFLQANDDFKVSAPDVNVPLPIYSNARIFIQEAKYSFHLVEPGFHWIRLHFYPIKNNVFDLQKATFSVNTDAFVLLHSFNVNNTDKAILKEYLINATEPQFTLSFIPLKNSAAFINAIELVSAPQNLISDTGSGLFPVAEVNGLTAYAFQPVYRLNNGGPLITSSNDTLGRTWESDEPYLTNKNLAKSVSVATNVIKFPQDTPTISPLIAPQSVYSSATEMGDAGVNLPNFNVSWKFDVDTSFSYLIRLHFCDIVSKGLNQLYFNVYVNSKIAIPNLDLSAITGALATPYYKDFVVNATLMTQGLTVQVGPANADGGNANAILNGIEVLKISNTVNSLDGEFGVDGRRLGGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNIFSSSMGLGRIFSFAEIQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSMIGYCDENDEMILVYEYMPNGHLRDHLYGKNMPSLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPQLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDENEIKASASAAAAVPTSPAPTAPATTTDDTPPVAHQEVNTNNTNNNTNNTTNNNNNNGPAEVQGIDDHSGTAMFAQFSNLNGR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01439 897 ProSiteProfiles Protein kinase domain profile. 528 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01439 897 Gene3D - 236 420 - -
Trre16g01439 897 Gene3D - 61 211 - -
Trre16g01439 897 FunFam Putative receptor-like protein kinase 61 211 - -
Trre16g01439 897 SUPERFAMILY Protein kinase-like (PK-like) 511 795 IPR011009 -
Trre16g01439 897 Gene3D Phosphorylase Kinase; domain 1 490 603 - -
Trre16g01439 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Trre16g01439 897 FunFam receptor-like protein kinase FERONIA 491 603 - -
Trre16g01439 897 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Trre16g01439 897 Gene3D Transferase(Phosphotransferase) domain 1 604 827 - -
Trre16g01439 897 Pfam Protein tyrosine and serine/threonine kinase 531 792 IPR001245 GO:0004672|GO:0006468
Trre16g01439 897 FunFam Receptor-like protein kinase FERONIA 604 818 - -
Trre16g01439 897 FunFam Receptor-like protein kinase FERONIA 235 420 - -
Trre16g01439 897 SMART serkin_6 528 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01439 897 CDD STKc_IRAK 534 798 - -
Trre16g01439 897 MobiDBLite consensus disorder prediction 812 880 - -
Trre16g01439 897 PANTHER OS07G0166700 PROTEIN 514 804 IPR045272 GO:0004714|GO:0006468
Trre16g01439 897 MobiDBLite consensus disorder prediction 833 876 - -
Trre16g01439 897 Pfam Malectin-like domain 64 417 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01439 Trre-Chr16 11304820 11307513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01439 56 897 Receptor kinase-like Gene Family AT4G39110 66.824 0.0 1179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre16g01439 Malectin_like 3.9e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01439 - - tpra:123893803 1618.59