Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01437 ATGGAGTCACCCGTTGATATCTTACCTGCTAAACGCCCCGCTCCAACTGGAATTTCATCTGGGGAGGGATGCAAAAGACGTAAGTTATCAAGTGATAGTTTGCCCAATTCGGCAAATACGAATGTTGTAGATTACACAAATCCGTATGCAATTTCAGAGGCTCTAAATCGTTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGATATTGAAGCCCTTATAACCCGAAAAATGAAAATATTGGGCCCTTACTTTGCAAAGTATCCTACGCTTGTTGATAAGTTATTGAAGGTGGTGGTGATAAATCATGATGAAGAAACTCACAACTCGGAAAATAAAAAAGTTACTGGTATGTCACATCAAAATGTCATTGATTTGGATGAAAAGGATGTTTTGGCACCAAAAAGAGAAAAGGATGTACCTGCCACACCATGTCCTGTTGTTATCATTGATTCAGACGATGAAGATGATGCGGATCAAAATTCATTTCATCCATTTCATGAAGTTGTGTTGCCGCAACCAGTTCCTTCTCCTGCATTAAGAATGACTGGGTATCATGCTTCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGATTCAAGTCTGCCTCCTTATGCTTACCATGGAGAAAGTGCAGATAAAATTTTTGAAACAAGCCTGCCTCCTAAAGATAACCCAAGGAAAGATAAAGGTGTTTATGTTGGTGTACATGAGGAAGATGATCAGGTTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGAGAAATGTCAATGGCAATAGAAACTTCTAAAGACATTTCTGCAGATCCTCAACCCGAAGAAGAAGAAGAGGAAGAAGATGCTGACTGTGATCATTCTTTCGTTTTAAAAGACGATCTTGGATATGTTTGCCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTTCAATACAGGGTTAAAAGGAGCACAAGGACTTATATGTCTGATTCGTCGAATGCCAAAGATAAAGTTGATGCGTTTGGTGTGAAGATTAAAGAAGATGATCTTGTGGTAACTGATATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTCGAAGGCTTCAACTTTCTTGTCCGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCCAGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCAACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATATTCCACTTTATGACCTATACACTGTGAAGGCAGACAGTAGACCTCAACAACTGGAGGTGTTAAAACAATGGATGGATAACAAGAGTATACTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTGATTGATAATAGTAATAACAATGCATCGATATCTTGCCGAGAGATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACTGATATGGTACAGTCCCTTGCCAAAGTACTAACACCAAGGAAAGTTGTACTGTCTGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAATGTTCTCAATCTGGTGCGGCCAAAGTTTTTAAAGATGGAAACATCTAAGCCTATTGTCCGGCGCATTCAGAGTAGGATCCATATAAGTGGCGTGAAACGCTTCGATGAATTGGTCGAGAATACATTGCAGAAGGACCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTACTATAAAGGAGATTTTCTTGATGAACTTCCTGGCCTTGTAGATTTCACTGTGGTGCTCAAACTTACGCCTAGACAGAAGCATGAAGTTGAGAAAGTAAGGAAGATATCAAGAAAGTTCAAAATGTCTGCTGTAGGCAGTGCAGTGTATTTGCACCCTAAGTTGAAGCCGCTTGCTGATAAATGCGTTGAAAAATCGGTTCTTCAAAAACAAAAATGTGTTGAAAAATCCATATCGGATAATACAATGGATGATTTTATAGCAAACATAGATCTTAGAGATGGGGTCAAATCAAAATTCTTTCGCAATATGCTGAATCTATGTGAATCAGCTGGGGAGAAACTTTTGGTGTTCAGTCAATATCTCTTGCCTTTGAAATATTTGGAAAGGTTAGCTGTGAAGTGGAAGGGATGGGGTGTCGGAAAAGAAATCTTTGTGATTTCAGGAGATTCAACCGCTGAACAAAGGGAGTATTCCATGGACAAGTTTAACAATACACCCGAGGCAAAGATATTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATTTAAACCCATCTGTTACCCGTCAAGCTATCGGCCGTGCTTTCCGACCAGGCCAGAAAAGAAAAGTCTTTGTGTATCGATTGGTAGCTGCCGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCTTTTGAAGTTGAGACTCTTGATGTGAAGGAATGTGGTGATCTGTTTCTGGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAAAAGGTAG 2724 0.4005 MESPVDILPAKRPAPTGISSGEGCKRRKLSSDSLPNSANTNVVDYTNPYAISEALNRLESGKFGSVTKDIEALITRKMKILGPYFAKYPTLVDKLLKVVVINHDEETHNSENKKVTGMSHQNVIDLDEKDVLAPKREKDVPATPCPVVIIDSDDEDDADQNSFHPFHEVVLPQPVPSPALRMTGYHASNAYHGESADLKFDSSLPPYAYHGESADKIFETSLPPKDNPRKDKGVYVGVHEEDDQVDAEDDGLEDIWREMSMAIETSKDISADPQPEEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYRVKRSTRTYMSDSSNAKDKVDAFGVKIKEDDLVVTDISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRPQQLEVLKQWMDNKSILFLGYKQFSSIVIDNSNNNASISCREILLKVPSILILDEGHTPRNENTDMVQSLAKVLTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQSRIHISGVKRFDELVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHEVEKVRKISRKFKMSAVGSAVYLHPKLKPLADKCVEKSVLQKQKCVEKSISDNTMDDFIANIDLRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAVKWKGWGVGKEIFVISGDSTAEQREYSMDKFNNTPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01437 907 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 209 906 IPR044567 GO:0080188
Trre16g01437 907 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Trre16g01437 907 MobiDBLite consensus disorder prediction 266 285 - -
Trre16g01437 907 Pfam SNF2-related domain 385 594 IPR000330 GO:0005524|GO:0140658
Trre16g01437 907 SMART helicmild6 746 831 IPR001650 -
Trre16g01437 907 CDD SF2_C_SNF 714 842 - -
Trre16g01437 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 576 IPR027417 -
Trre16g01437 907 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g01437 907 Gene3D - 332 593 IPR038718 -
Trre16g01437 907 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 885 IPR001650 -
Trre16g01437 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 558 IPR014001 -
Trre16g01437 907 SMART ultradead3 361 571 IPR014001 -
Trre16g01437 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 869 IPR027417 -
Trre16g01437 907 Gene3D - 628 894 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01437 Trre-Chr16 11276435 11282821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01437 728 859 RAD5 or RAD16-like Gene Family AT5G43530 37.121 7.75e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre16g01437 SNF2_N 5.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01437 K10875 - gmx:100780454 1349.73