Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01431 ATGCCAGGGAAACCTGAAACTGATTATTTGGGAGTAAAGCATAGTGAGTTGCCATCATCTATTTACTCTCATCAGCCATGGTGGCTTCAAAATGCCTCCAAATCATCCTCAGCTGATCAACTAAATGGTTCAATCATGAATGGTGTCACACATTTGGTTTCACCATCACTTTCTGTAACTGATAAGTCAGGTGGGAACATTGCCAAGGAGCACCGTAACATCAAACACGCCCTATCATCATCTCCATTTACCATGGACAAACACCTTGATGGTCATTCAATTGTTTTAACATCCCCTCATTCAAATGCAGAGTTTGGTCAAATCTTGTCTCCTTATGGACAGCAAGCTATGATGAATCCTCATCTATACCAAATGCATCATGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAGTCGCGCGCTAAGGCTGAACTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGCTTTCTCAATACAAAGAAGCTCGAACATAATGATTCTAATGCCGCTCTAGAAAAAGACAACAATACTGGCACAACATTGGTTGCCAACAATGAGAATCAACAACGCTCATCTAATGCATCGCAGTCCATACACAAAATGCAGGGTTTCAACATCGGTTACCATGGTGGAAATGGTTTTACAGCACTATGTCATTCACAGGCAAATGGAAAACAGGAGAGTGATTTCTTTGGTAAAGAGAGGGAATCAAATGGTGGTATTAAATGA 843 0.4128 MPGKPETDYLGVKHSELPSSIYSHQPWWLQNASKSSSADQLNGSIMNGVTHLVSPSLSVTDKSGGNIAKEHRNIKHALSSSPFTMDKHLDGHSIVLTSPHSNAEFGQILSPYGQQAMMNPHLYQMHHARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHNDSNAALEKDNNTGTTLVANNENQQRSSNASQSIHKMQGFNIGYHGGNGFTALCHSQANGKQESDFFGKERESNGGIK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01431 280 SMART cbf3 136 197 IPR001289 GO:0003700|GO:0006355
Trre16g01431 280 ProSiteProfiles NF-YA/HAP2 family profile. 137 197 IPR001289 GO:0003700|GO:0006355
Trre16g01431 280 ProSitePatterns NF-YA/HAP2 subunit signature. 142 162 IPR018362 GO:0003677|GO:0016602
Trre16g01431 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 139 194 IPR001289 GO:0003700|GO:0006355
Trre16g01431 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 235 IPR001289 GO:0003700|GO:0006355
Trre16g01431 280 Gene3D - 137 198 - -
Trre16g01431 280 PRINTS CCAAT-binding transcription factor subunit B signature 140 162 IPR001289 GO:0003700|GO:0006355
Trre16g01431 280 PRINTS CCAAT-binding transcription factor subunit B signature 171 194 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01431 Trre-Chr16 11218462 11220547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01431 2 233 CCAAT-HAP2 Transcription Factor Family AT5G12840 35.926 7.93e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre16g01431 CBFB_NFYA 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01431 K08064 - gmx:100782085 362.459