Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01424 ATGGATGGCGGTGGCTTTCCTTATGCTGTGAATGAAGATTTCTTTCAAGGCATCAATCATGTTCCTGTCAATTATGCCTTTCCTGGTTCAATGCCTGATCAGGATAGTGTCTACTGGTCGATGAACATGAGTCCTTATAAGTTTGGAATGTATGGACCTGGAAGCACGTCTTATTACAGTTCTTATGAGGTAAACGATCACTTGCCAAGAATGGAGAACAACAGGACCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCGGCTTCGACAGATTCTCCATCTAGAAGGGATGGAGTTAGCATGCAGACTATCCCCGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTGATATGGCAGGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTCGGGGAAGCAGTTGGAACTCAAAGCAGAGGTCTTCCTCAAGAACTTATTGATACGCTTCCAACCTCGAAGTACAAATTCGGCAGCTTATTCAAAAGAAAAAATTCTGGGAAAAAGTGTGTAATTTGCCAGATGACTTATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCTATGCAGTAG 696 0.4282 MDGGGFPYAVNEDFFQGINHVPVNYAFPGSMPDQDSVYWSMNMSPYKFGMYGPGSTSYYSSYEVNDHLPRMENNRTEWEYPSEVISEEPASTDSPSRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKKCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESMQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01424 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 227 IPR033276 GO:0004842|GO:0016567|GO:0046621
Trre16g01424 231 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Trre16g01424 231 MobiDBLite consensus disorder prediction 87 121 - -
Trre16g01424 231 SMART ring_2 180 220 IPR001841 -
Trre16g01424 231 Pfam Ring finger domain 179 221 IPR001841 -
Trre16g01424 231 FunFam E3 ubiquitin ligase BIG BROTHER 142 225 - -
Trre16g01424 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 225 IPR013083 -
Trre16g01424 231 MobiDBLite consensus disorder prediction 83 121 - -
Trre16g01424 231 SUPERFAMILY RING/U-box 179 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01424 Trre-Chr16 11149878 11153268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01424 5 231 C3H Transcription Factor Family AT3G63530 55.172 2.21e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01424 K19045 - gmx:100785290 407.142