Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01423 ATGAATGATGGAAGACAAATGGGGGTGCATTATATGGATGGCGGTGGCTTTCCTTATGCTGTGAATGAAGATTTCTTTCAAGGCATCAATCATGTTCCTGTCAATTATGCCTTTCCTGGTTCAATGCCTGATCAGGATAGTGTCTACTGGTCGATGAACATGAGTCCTTATAAGTTTGGAATGTATGGACCTGGAAGCACGTCTTATTACAGTTCTTATGAGGTAAACGATCACTTGCCAAGAATGGAGAACAACAGGACCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCGGCTTCGACAGATTCTCCATCTAGAAGGGATGGAGTTAGCATGCAGACTATCCCCGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTGATATGGCAGGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTCGGGGAAGCAGTTGGAACTCAAAGCAGAGGTCTTCCTCAAGAACTTATTGATACGCTTCCAACCTCGAAGTACAAATTCGGCAGCTTATTCAAAAGAAAAAATTCTGGGAAAAAGTGTGTAATTTGCCAGATGACTTATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCTATGCAGTAG 729 0.4266 MNDGRQMGVHYMDGGGFPYAVNEDFFQGINHVPVNYAFPGSMPDQDSVYWSMNMSPYKFGMYGPGSTSYYSSYEVNDHLPRMENNRTEWEYPSEVISEEPASTDSPSRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKKCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESMQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01423 242 MobiDBLite consensus disorder prediction 98 132 - -
Trre16g01423 242 MobiDBLite consensus disorder prediction 94 132 - -
Trre16g01423 242 FunFam E3 ubiquitin ligase BIG BROTHER 153 236 - -
Trre16g01423 242 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Trre16g01423 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 236 IPR013083 -
Trre16g01423 242 Pfam Ring finger domain 190 232 IPR001841 -
Trre16g01423 242 SUPERFAMILY RING/U-box 190 236 - -
Trre16g01423 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 238 IPR033276 GO:0004842|GO:0016567|GO:0046621
Trre16g01423 242 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01423 Trre-Chr16 11149878 11153301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01423 9 242 C3H Transcription Factor Family AT3G63530 54.393 2.66e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01423 K19045 - gmx:100792734 429.098