Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01418 ATGACAGATCCTCAATCTAACTTTTTTGATGAATGGTTCAACTTCATGCTCCTCAACCCTCATAATCATAATAATCAATACTCTTCTTCTTCTTCTTCTCATCAACCCTCATCATCTTCCTCAACCATAAATCCTCCTTCTCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAATTAAGTCTCATAAATCATCATCAACATCAACAACAAAATGAACCCTCAAACACCACAATAGAACATGAAGAATACAAAAGAATATTGGAAAGGCATGGTGATGATGATGATGGTGGTGATGAAAGTGTTACTGTTTCCCTACAAATAGGGCTTCCTAGAATGAATAGTAGTTCTTCTTCTGATCTTGGGTCAAGGATGGTTTCAAATTGTATAGAAATGGCTGAAAAAGAAGAACCTAATATGATTTCTGAAAACCCTTTGGATAAATTGAACAAGGGTCAATATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTCTAAAACTTTCAATAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGTTAAGGCATCCATGTTATTGTTGTGCACCAGGTTGCAAGCACAACATTGATCATCCTAGAGCAAAGCCTCTTAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATTAAACCTTATTTGTGTAGAAAATGTGGCAAGTCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGTAAAATATGGTATTGTTTATGTGGTTCAGATTTTAAACATAAAAGGTCCCTTAAAGATCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGCTGGTTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 993 0.3615 MTDPQSNFFDEWFNFMLLNPHNHNNQYSSSSSSHQPSSSSSTINPPSPPLREALPLINKLSLINHHQHQQQNEPSNTTIEHEEYKRILERHGDDDDGGDESVTVSLQIGLPRMNSSSSSDLGSRMVSNCIEMAEKEEPNMISENPLDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRHPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYLCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01418 330 MobiDBLite consensus disorder prediction 24 47 - -
Trre16g01418 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 273 IPR013087 -
Trre16g01418 330 FunFam Zinc finger protein WIP2 222 304 - -
Trre16g01418 330 MobiDBLite consensus disorder prediction 24 52 - -
Trre16g01418 330 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Trre16g01418 330 SUPERFAMILY beta-beta-alpha zinc fingers 169 273 IPR036236 -
Trre16g01418 330 PANTHER ZINC FINGER PROTEIN WIP2 21 323 IPR043584 GO:0003700|GO:0010468
Trre16g01418 330 Gene3D Classic Zinc Finger 228 302 - -
Trre16g01418 330 Gene3D Classic Zinc Finger 168 191 - -
Trre16g01418 330 Pfam C2H2-type zinc finger 169 188 - -
Trre16g01418 330 FunFam zinc finger protein WIP2-like 168 191 - -
Trre16g01418 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Trre16g01418 330 SMART c2h2final6 253 273 IPR013087 -
Trre16g01418 330 SMART c2h2final6 169 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01418 Trre-Chr16 11091453 11094819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01418 1 323 C2H2 Transcription Factor Family AT3G57670 54.133 1.29e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g01418 zf-C2H2_6 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01418 - - gmx:100794446 508.834