Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01413 ATGGCTCACAAATTAACCACCAAAAAAGAAGAAACAGAATTTGAAGTACCTGAAACAACAATCACACCATGCATCAACAACAACAACAACAACAACCCTTCAACAACAATAACAACAGAATCTTCTAGATTTTTTGAAGACAACATCATCAAACCATCACCAACAGCCAGATCCGCCACGTCATCACGTTCTCCGAAGAGATCTCATCCTAGCAACGAAGAAATAGAAATTCAACCACAAACGACGTCGTCAGAAGCTAAACGTGCCGTTAATCGTTGCTCTGGTTGTCGAAAGAGAGTCGGTCTTACAGGATTCCGTTGCCGATGTGGTGATCTGTTTTGCTCCGATCATCGTTACTCCGATCGTCATGATTGTTCTTATGATTATAAAGCTGCTGGTAGAGAAACTATTGCTAGAGAAAATCCTGTTGTTAGAGCGGCTAAAATCGTTAAGCTCTGA 459 0.4118 MAHKLTTKKEETEFEVPETTITPCINNNNNNNPSTTITTESSRFFEDNIIKPSPTARSATSSRSPKRSHPSNEEIEIQPQTTSSEAKRAVNRCSGCRKRVGLTGFRCRCGDLFCSDHRYSDRHDCSYDYKAAGRETIARENPVVRAAKIVKL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01413 152 SUPERFAMILY AN1-like Zinc finger 78 146 IPR035896 -
Trre16g01413 152 Pfam AN1-like Zinc finger 93 130 IPR000058 GO:0008270
Trre16g01413 152 SMART AN1_Zf_4 93 130 IPR000058 GO:0008270
Trre16g01413 152 ProSiteProfiles Zinc finger AN1-type profile. 87 133 IPR000058 GO:0008270
Trre16g01413 152 FunFam Zinc finger AN1-type containing 6 65 148 - -
Trre16g01413 152 MobiDBLite consensus disorder prediction 19 66 - -
Trre16g01413 152 MobiDBLite consensus disorder prediction 1 16 - -
Trre16g01413 152 PANTHER AN1-TYPE ZINC FINGER PROTEIN 53 151 - -
Trre16g01413 152 Gene3D - 57 148 IPR035896 -
Trre16g01413 152 MobiDBLite consensus disorder prediction 1 88 - -
Trre16g01413 152 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01413 Trre-Chr16 11051155 11051613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01413 64 152 C2H2 Transcription Factor Family AT3G52800 52.809 1.17e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01413 - - lja:Lj3g3v0478150.1 189.119