Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01409 ATGGACAAGGGACCGCCTCCTACCCTCTTTGTTAATGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAAAGGGGGAAAAATGCCAAACCAGAGGACTCTAAACCAATTAAAGTTGTTTCAGGACCTCTGACTCCTAAACCCTCCAATAGTAAGGCTAATGATGCAAAGAAATCTTGCCAGGGTAGTTCCAGCGGCAAACTTGCTTTCAGTTTGAAACAAAAGTCAAAGCTAGTGCTGCCCCCTGTTAAGTTGGCTGACGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAATGATGCACCATTAAAACGACAAAAATTGGGTCAGGATGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTCGCAAGTTTTGTGGCTAAAAATGGAAGACCATTTGAAGATGTTACACGGCAAAAAAACCCTGGGGATACACCTTTCAAGTTTTTGTTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAAGAGAAGGCACTTTCACAGTACAAAGAACCACAAGCAAATCATAATGTTGGGACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTCCGAGATCATCCCAGCAGCATTCAACTTACCAAATCCCTGCTTCTGCTTTATATGATAGTGAATTATCAAGGGCTTCTGGATCTTCAGCTCAAGCATTTTCAGTTGGAAGCTCGGATGAGCCTGGTGGATCATCAAGTGCTAGTTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGTATTCAAAAGACGAGATGCCCCCTCCTCCTTCTCTTCAACAAGCATCAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGGAAGAACTTGAAAAATTCTTGGCTAGCTGTAACGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCGGAGAAGGCCAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCCATCATGGCTGGCAGTGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAGGATGACATCTATGAGCAATACAAAAAGCGAATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1305 0.436 MDKGPPPTLFVNDGSFMERFRQLQQEQERGKNAKPEDSKPIKVVSGPLTPKPSNSKANDAKKSCQGSSSGKLAFSLKQKSKLVLPPVKLADDDEDEIDAGYVSNDAPLKRQKLGQDDGIEQSSRQLDVAPPPPSDPTVKKVADKLASFVAKNGRPFEDVTRQKNPGDTPFKFLFDVKCSDYKYYEHRLAQEEKALSQYKEPQANHNVGTSISSSRPTNGPPRSSQQHSTYQIPASALYDSELSRASGSSAQAFSVGSSDEPGGSSSASSLALMEFYMKKAAQEEKFKQPKYSKDEMPPPPSLQQASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEAAEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGSVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01409 434 SMART G-patch_5 349 396 IPR000467 GO:0003676
Trre16g01409 434 MobiDBLite consensus disorder prediction 48 71 - -
Trre16g01409 434 Pfam G-patch domain 352 395 IPR000467 GO:0003676
Trre16g01409 434 MobiDBLite consensus disorder prediction 87 139 - -
Trre16g01409 434 Gene3D Surp module 114 196 IPR035967 GO:0003723|GO:0006396
Trre16g01409 434 MobiDBLite consensus disorder prediction 24 71 - -
Trre16g01409 434 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Trre16g01409 434 MobiDBLite consensus disorder prediction 286 315 - -
Trre16g01409 434 SUPERFAMILY Surp module (SWAP domain) 123 193 IPR035967 GO:0003723|GO:0006396
Trre16g01409 434 MobiDBLite consensus disorder prediction 197 243 - -
Trre16g01409 434 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Trre16g01409 434 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Trre16g01409 434 ProSiteProfiles G-patch domain profile. 351 398 IPR000467 GO:0003676
Trre16g01409 434 MobiDBLite consensus disorder prediction 248 267 - -
Trre16g01409 434 MobiDBLite consensus disorder prediction 195 243 - -
Trre16g01409 434 MobiDBLite consensus disorder prediction 24 38 - -
Trre16g01409 434 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 434 IPR040169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01409 Trre-Chr16 11027006 11030203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01409 337 434 C2H2 Transcription Factor Family AT5G26610 32.743 7.16e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01409 K13096 - gmx:100786213 629.787