Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01408 ATGAGTATTGTGTATAATCAAGCTCTTGATTACTCTGACAGTGTTTCAAGTAGGAATTCAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCACCAAAACAATTCCGGCTTATCGCGGTACAATTCGGCTCCAAACTCATCGCTTACAAGTCTTGTGGACACAAGCATTGGTAATTTTTTCAATGATGAAACTTTCACAAATGATAATCATCATCAACAAAATCAGAATCAACATTATTCTTCATCTACAAGTTCAGAAATGGAAACCATGTTGACAAATTCTGAATCTTTGTATGAATTTGGAGATAATAAACCAATGAAAGAAGAAGAAAATGACCCTTTTTCAAATGGATTACAATACAATGGTTACTCTTATGATTCACAAAATCAGATAATTTATCAAACTCAGCAGAATCAAGGATTGGCAAATGGTTTTGATGGTAAATTTAGTGTAATGAGTTCCTTGGATTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGAGTTTCTCTCCAATTATTCAATTAATAATGGAAGTGTTAATGGACAAGCTATTACAACAACTAGTGGATTGCATTGTACTTTGAATTTCTCATCAAGATCATCCTCTAGCTCTATCAAGATGCCACTAATTGTTGAAAATGAACATGAAACTCTTCAAGAAAATGTTATTAAAAGTAGGAACGTGGGAAATGATAATGGTATCACTAAATGTTACATGCCTAGCTTCACCAATGACTATTGGGATAGTTCTACATTTAGTGCTCCAAAAAATGGTGAATTCATGTTTTCCACTTCAAATGCTTCAGAAACTCAGGATGTAGACTTTAGATACCAAAAACATGGTTTGAGGCACCATTTGAGTCTTCCTAGCTCTTCTACTAAGATGACTCCAATGGAGAAGTATTTACACCTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCTACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATAAAAAAATTGCAAGACCTTTTCCCTAATTCGGATAAGCAAGCTAGCACAGCTGATATGTTAGATGAAGCAGTTCAGTACATTAAAGATCTGAGGAAACAACTTAAGATACTAACAGATACTAAGGCAAATTGCAAATGTACAAGTAATTAG 1197 0.3442 MSIVYNQALDYSDSVSSRNSEMDSKFGYSQTQQHCHQNNSGLSRYNSAPNSSLTSLVDTSIGNFFNDETFTNDNHHQQNQNQHYSSSTSSEMETMLTNSESLYEFGDNKPMKEEENDPFSNGLQYNGYSYDSQNQIIYQTQQNQGLANGFDGKFSVMSSLDSSNNCSNLIRQKSSPAEFLSNYSINNGSVNGQAITTTSGLHCTLNFSSRSSSSSIKMPLIVENEHETLQENVIKSRNVGNDNGITKCYMPSFTNDYWDSSTFSAPKNGEFMFSTSNASETQDVDFRYQKHGLRHHLSLPSSSTKMTPMEKYLHLQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQASTADMLDEAVQYIKDLRKQLKILTDTKANCKCTSN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01408 398 CDD bHLH_AtbHLH_like 334 386 IPR045239 -
Trre16g01408 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Trre16g01408 398 Gene3D - 331 397 IPR036638 GO:0046983
Trre16g01408 398 MobiDBLite consensus disorder prediction 12 52 - -
Trre16g01408 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 391 IPR036638 GO:0046983
Trre16g01408 398 MobiDBLite consensus disorder prediction 68 95 - -
Trre16g01408 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 99 389 - -
Trre16g01408 398 Coils Coil 369 396 - -
Trre16g01408 398 Pfam Helix-loop-helix DNA-binding domain 335 379 IPR011598 GO:0046983
Trre16g01408 398 SMART finulus 335 385 IPR011598 GO:0046983
Trre16g01408 398 FunFam Transcription factor bHLH130 family 330 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01408 Trre-Chr16 11008497 11011888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01408 40 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 33.244 6.56e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g01408 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01408 - - cam:101493473 495.352