Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01407 ATGGGAAAATATGGTCCAAAAATGGATGGGATTATTACAGCACAGAAAAGAAAGTTACCAAATGATACAAGTGGATTTGTGTTTAAAAATTGTAAGATTAGTGGGAAAGGAGGAAAGGCTATACTTGGGAGGGCTATGGGTGCTTATGCAAGAGTCATCATAGTGGTTAGACCTGAGGGTTGGAATCCTAATACCTATGCAGGACATGAAGCAAATCTTACTTTTGTGGAGGAGGGAAATAGAGGACCTGGAGCAAACAAATCACAGCGTATGAAATGGATGAAACACTTGAGTGGAGCTGGACTTGATAAATTCAAGAAAATCTCTTTTATTGATGAAGATGGCTGGATTGCAAAATTACCAAAAACCATATTTGGTTGA 381 0.3832 MGKYGPKMDGIITAQKRKLPNDTSGFVFKNCKISGKGGKAILGRAMGAYARVIIVVRPEGWNPNTYAGHEANLTFVEEGNRGPGANKSQRMKWMKHLSGAGLDKFKKISFIDEDGWIAKLPKTIFG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01407 126 Pfam Pectinesterase 9 112 IPR000070 GO:0030599|GO:0042545
Trre16g01407 126 Gene3D - 2 124 IPR012334 -
Trre16g01407 126 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 118 - -
Trre16g01407 126 SUPERFAMILY Pectin lyase-like 9 118 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01407 Trre-Chr16 10998854 10999802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01407 8 117 Carbohydrate Esterase AT1G05310 35.043 5.10e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01407 - - mtr:25501033 192.971