Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01404 ATGAACAGTCCAGTAATATTGGAGAATAGCATCATACAAGCCAAAGCTGCTTGGATCTATGCAGATAAATGTGTTTTCTTTGATTGTGCTTTTCTTGGGGTGCAAGACACCCTATGTGATGATTATGGTCGACATTACTACAAAAATTGTTACATTCAAGGTGGAATCGATTTCATATATGGGGATGGTCAATCTATCTTTGAGGCAAGTACAATATTTTTTTCAATGGGAAAATATGGTCCAAAAATTGATGGGGTTATTACAGCACATGAAAGGGATTCACCAAATGATACAAGTGGGTTTGTGTTCAAAAATTGTAACATAAGTGGGACAGGAGGAAAGGCTGAACTTGGGAGGGCAATGGGTGCTTATGCAAGAGTCATCATATCTGATTCATACCTATCTGATGTGGTTAGTCCCGAGGGTTGGAGTCCTAGAACTTTTGTTGGCCACGAATCAAACTTTACTTTTGTGGAGGAGGGAAATAGAGGACCTGGAGCAGACAAATCAAAGCGTGTGAAATGGATGAAGCACTTGAGTGGACATGAACTTGATAAATTCTTGAATATCTCATATATTGATGAAGAAGGGTGGATTTCTGAATTGCCAAAAACTCTATTCATTTGA 627 0.386 MNSPVILENSIIQAKAAWIYADKCVFFDCAFLGVQDTLCDDYGRHYYKNCYIQGGIDFIYGDGQSIFEASTIFFSMGKYGPKIDGVITAHERDSPNDTSGFVFKNCNISGTGGKAELGRAMGAYARVIISDSYLSDVVSPEGWSPRTFVGHESNFTFVEEGNRGPGADKSKRVKWMKHLSGHELDKFLNISYIDEEGWISELPKTLFI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01404 208 Pfam Pectinesterase 13 194 IPR000070 GO:0030599|GO:0042545
Trre16g01404 208 SUPERFAMILY Pectin lyase-like 13 200 IPR011050 -
Trre16g01404 208 Gene3D - 3 206 IPR012334 -
Trre16g01404 208 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01404 Trre-Chr16 10976693 10978038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01404 13 199 Carbohydrate Esterase AT1G05310 40.000 1.45e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01404 - - mtr:25501033 353.599