Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01395 ATGAATCCAGGGGTAACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTAGCACCAAGAAGTGAAGCTCCAAACCAGGTTCATAACCCTGAAGCAGCAGCAGCAGCTGCGGCCGGTACTGCCCCAGCTGCTGCTCCTGTCGGGGTTTCACCTGTGAGTGTAGGTTTGGATGGAACAGTTAAGAAGAAAAGGGGTCGACCAAGGAAATACGGGCCAGATGGGTCTGTCCATATGGCATTGACACCAGCGCCTATCTCATCTTCGGCTCCGCCCACTCTTCACGACTTCTCATCTGTGAAGCGTGTGAAACCACACGGGATGGAGTTCAAGAGGGCAAAGAAAGTTGTGATGGATCATCTCGGTGAGATGAATGGACACGCTGATGGCACAAACTTTATGCCACATTTCATCACTGTCAATGCCGGAGAGGATATTACGAACAAAGTTATATCTTTTTCTCAACAAGGGCCGCGAGCAATATGCATCTTGTCTGCTACCGGAGCGATTTCAAATGTTACACTCCGTCATCCAGATTCCTCTGGTGGTACTTTGACCTACGAGGGTCGTTTTGAGATCCTTAACTTGTCTGGATCATTCATGCCTACTGAGAATCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGTGTCTCACTGGCAAGAACTGATGGTCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAACGGCAATCAAGATCCGAAACTGAAGAAGCCGAAGTCTGATTATGCAGCAGCCACATTTACTCAAGCCATTGTGGTATCCTCAGCACCGCCACCAGCACCCCAAACTAATAATGCTGAAAAAGAGGATTCCATGGGTGGCGGTGGACATGTACTGCAAAATTCTGGAAACGTGAACTCAAATTTTACTTCTCAGCCCAGCGCATTTCGAAGAGACAACAGCTGGGCCAACATGCAGTCTCTGCCGGACACAAGAAAGTCGGCTACTGATATAAACATATCTTTGCCTGATAGTTAA 1047 0.4881 MNPGVTVIGAEAPSAYHVAPRSEAPNQVHNPEAAAAAAAGTAPAAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVHMALTPAPISSSAPPTLHDFSSVKRVKPHGMEFKRAKKVVMDHLGEMNGHADGTNFMPHFITVNAGEDITNKVISFSQQGPRAICILSATGAISNVTLRHPDSSGGTLTYEGRFEILNLSGSFMPTENQGTRSRAGGMSVSLARTDGRVVGGGVAGVLIAASPVQVVVGSFLPNGNQDPKLKKPKSDYAAATFTQAIVVSSAPPPAPQTNNAEKEDSMGGGGHVLQNSGNVNSNFTSQPSAFRRDNSWANMQSLPDTRKSATDINISLPDS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01395 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Trre16g01395 348 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Trre16g01395 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 315 IPR039605 GO:0003680
Trre16g01395 348 MobiDBLite consensus disorder prediction 45 77 - -
Trre16g01395 348 MobiDBLite consensus disorder prediction 277 348 - -
Trre16g01395 348 FunFam AT-hook motif nuclear-localized protein 1-like 135 266 - -
Trre16g01395 348 Gene3D - 135 263 - -
Trre16g01395 348 CDD DUF296 135 248 IPR005175 -
Trre16g01395 348 MobiDBLite consensus disorder prediction 277 292 - -
Trre16g01395 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 251 - -
Trre16g01395 348 MobiDBLite consensus disorder prediction 300 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01395 Trre-Chr16 10939029 10942185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01395 4 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.082 8.51e-91 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01395 - - psat:127075781 512.301