Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01394 ATGGAAGGAAGAGAAGGTATGAATCCAGGGGTAACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTAGCACCAAGAAGTGAAGCTCCAAACCAGGTTCATAACCCTGAAGCAGCAGCAGCAGCTGCGGCCGGTACTGCCCCAGCTGCTGCTCCTGTCGGGGTTTCACCTGTGAGTGTAGGTTTGGATGGAACAGTTAAGAAGAAAAGGGGTCGACCAAGGAAATACGGGCCAGATGGGTCTGTCCATATGGCATTGACACCAGCGCCTATCTCATCTTCGGCTCCGCCCACTCTTCACGACTTCTCATCTGTGAAGCGTGTGAAACCACACGGGATGGAGTTCAAGAGGGCAAAGAAAGTTGTGATGGATCATCTCGGTGAGATGAATGGACACGCTGATGGCACAAACTTTATGCCACATTTCATCACTGTCAATGCCGGAGAGGATATTACGAACAAAGTTATATCTTTTTCTCAACAAGGGCCGCGAGCAATATGCATCTTGTCTGCTACCGGAGCGATTTCAAATGTTACACTCCGTCATCCAGATTCCTCTGGTGGTACTTTGACCTACGAGGGTCGTTTTGAGATCCTTAACTTGTCTGGATCATTCATGCCTACTGAGAATCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGTGTCTCACTGGCAAGAACTGATGGTCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAACGGCAATCAAGATCCGAAACTGAAGAAGCCGAAGTCTGATTATGCAGCAGCCACATTTACTCAAGCCATTGTGGTATCCTCAGCACCGCCACCAGCACCCCAAACTAATAATGCTGAAAAAGAGGATTCCATGGGTGGCGGTGGACATGTACTGCAAAATTCTGGAAACGTGAACTCAAATTTTACTTCTCAGCCCAGCGCATTTCGAAGAGACAACAGCTGGGCCAACATGCAGTCTCTGCCGGACACAAGAAAGTCGGCTACTGATATAAACATATCTTTGCCTGATAGTTAA 1065 0.4873 MEGREGMNPGVTVIGAEAPSAYHVAPRSEAPNQVHNPEAAAAAAAGTAPAAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVHMALTPAPISSSAPPTLHDFSSVKRVKPHGMEFKRAKKVVMDHLGEMNGHADGTNFMPHFITVNAGEDITNKVISFSQQGPRAICILSATGAISNVTLRHPDSSGGTLTYEGRFEILNLSGSFMPTENQGTRSRAGGMSVSLARTDGRVVGGGVAGVLIAASPVQVVVGSFLPNGNQDPKLKKPKSDYAAATFTQAIVVSSAPPPAPQTNNAEKEDSMGGGGHVLQNSGNVNSNFTSQPSAFRRDNSWANMQSLPDTRKSATDINISLPDS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01394 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 257 - -
Trre16g01394 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 254 IPR005175 -
Trre16g01394 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 321 IPR039605 GO:0003680
Trre16g01394 354 MobiDBLite consensus disorder prediction 283 354 - -
Trre16g01394 354 FunFam AT-hook motif nuclear-localized protein 1-like 141 272 - -
Trre16g01394 354 CDD DUF296 141 254 IPR005175 -
Trre16g01394 354 Gene3D - 141 269 - -
Trre16g01394 354 MobiDBLite consensus disorder prediction 283 298 - -
Trre16g01394 354 ProSiteProfiles PPC domain profile profile. 136 277 IPR005175 -
Trre16g01394 354 MobiDBLite consensus disorder prediction 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01394 Trre-Chr16 10939011 10942185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01394 6 285 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.693 8.31e-91 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01394 - - psat:127075781 524.628