Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01391 ATGAATTATTTTGGAGGAAAAATTGGTGGTGGAAGTGATCAAAGAGGAAATGGTAGTGGTCCTTGTGGTGCTTGCAAGTTTTTGAGAAGAAAGTGTATAAAAGGTTGCATATTTGCACCATATTTTGATTCTGACCAAGGAACGGTTCATTTTGCAGCGGTTCATAAAGTGTTTGGTGCAAGTAATGCCTCTAAGTTACTCGTGCGTATTCCAGCTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTCTTGCTAGGGCTAGAGACCCCGTTTATGGTTGTGTTGCTCATATCTTTGCACTTCAACAACAGGTCATGAGCTTGCAGGCAGAGTTAACCTATGTTCAGGCAACTCTCGCGACAATGCAGCGCCTCCCGATCTCACAAAGTCTTCATTCTTCTTCAGATCAGTTGGGAACAAATGCAGACTTGCAAAGTGCCACTAACATGTCCATGCACTTTGATCCTCATCAACAACTTTCAACATCATTGGATTTGAGCAGTTTCTTCAATCAATCAGATCAACAACTTGAGGATGATGAACTCCAAGCTTTGGCTAGAGAATTTGTCTCTAGGTACTTGCCTGGAGTAAGATTCCAGCCATCTAATTCTCACTAA 627 0.4163 MNYFGGKIGGGSDQRGNGSGPCGACKFLRRKCIKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLVRIPAHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAELTYVQATLATMQRLPISQSLHSSSDQLGTNADLQSATNMSMHFDPHQQLSTSLDLSSFFNQSDQQLEDDELQALAREFVSRYLPGVRFQPSNSH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01391 208 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Trre16g01391 208 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Trre16g01391 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01391 Trre-Chr16 10891021 10895734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01391 20 206 AS2 family AT4G00210 54.067 9.81e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g01391 LOB 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01391 - - tpra:123898243 378.252