Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01390 ATGAGTATAAACTCCGGTTGTAGTGGTAGCGGTTGCGGTGGCAGTGGTGGAAATGGAGGTACTTGCGGCCCATGTGGCGCGTGCAAGTTTTTGAGGAGAAAGTGTATTCCCGGTTGTATCTTTGCGCCTTACTTCGATTCGGAGCAAGGCGCTTCACATTTTGCAGCAGTTCACAAGGTTTTCGGTGCTAGTAACGTTTCAAAGTTGCTACAAAATGTTCCGGTTCATAAGCGTCTCGATGCGGTTGTCACTATTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTGCTCATATCTTTACTCTTCAGCAACAGGTGATGAGCTTACAAGCAGAACTCTCCCACTTACAAGGCCACCTAGCCTCATATGAGGTGCCTCAACCACCAACACCTTCTCCACCACAAGCACTTCCAATGGTCTCATTAGCCAACCTTCCATTACTCTCTCCTTCATCCATTCCACCCACATATGATTTGTCTTCACTTTTTGATCCTATGGCCCAAACTCCTTCATGGGCCATGCATCAAAGGCCCAATGAGCCCCATCAATTTTTGGGTAGTGGCACATCAACAAGTAGCAATAGTGGCGGTGGTGATCTTCAATCATTGGCAAGAGAGCTTTTGCATAGATATGGATCTGCTCCATCTTCTCATTCTCATTCTCATTCCAAATGA 690 0.4609 MSINSGCSGSGCGGSGGNGGTCGPCGACKFLRRKCIPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFTLQQQVMSLQAELSHLQGHLASYEVPQPPTPSPPQALPMVSLANLPLLSPSSIPPTYDLSSLFDPMAQTPSWAMHQRPNEPHQFLGSGTSTSSNSGGGDLQSLARELLHRYGSAPSSHSHSHSK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01390 229 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Trre16g01390 229 MobiDBLite consensus disorder prediction 177 205 - -
Trre16g01390 229 MobiDBLite consensus disorder prediction 177 229 - -
Trre16g01390 229 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Trre16g01390 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01390 Trre-Chr16 10876510 10881442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01390 27 214 AS2 family AT4G00220 63.542 4.27e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g01390 LOB 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01390 K21994 - gmx:100779541 301.597