Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01387 ATGGATCAAGTATCAGCACAAGGTCGTCCTCTTCCTTTTCTCACTAGAGATCTTCATCTTCATCCTCATCATCAATTCCACACCAACCACCAAACCAATGAAGAAGAACAACAAAGTGGCAATGGCAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACAACGATGATACTCCCACCGGTGGAGATGGAAAAGACGACGGTGGTAGCGGAAGTGCGGGAGGAGGTAGTGGTGGTGAGATGGGAAGGAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCGAAACCACCCATTATTATCACACGAGACAGCGCAAACGCACTCCGATCCCACGTGATGGAGGTCGCAAACGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCACGGAGGAGACAGCGTGGTGTCTGTATCCTCAGTGGAAGTGGAACCGTCACAAACGTGACTCTCCGTCAACCAGCATCACCTGGTGCGGTAGTCACACTTCACGGAAGATTTGAGATATTATCTTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGCGGACAAGGACAAGTAGTCGGTGGTAGCGTGGTGGGACCGTTGTTGGCTTCCGGTCCCGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCATATGAAAGGTTGCCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAGTGGAGGGTTAGGATCACCAGGAACTATGGGAACTCCACAGCAACAACAACAACAGCAACAACAACAACTTGTGGCAGATCCTAATCCTTCATCACTTTTCCATGGAGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGCTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA 918 0.4935 MDQVSAQGRPLPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNNDDTPTGGDGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGSGGLGSPGTMGTPQQQQQQQQQQLVADPNPSSLFHGGVPQNLLNSCQLPAEGYWGGSARPPF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01387 305 MobiDBLite consensus disorder prediction 250 281 - -
Trre16g01387 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 242 - -
Trre16g01387 305 ProSiteProfiles PPC domain profile profile. 107 245 IPR005175 -
Trre16g01387 305 PIRSF ESCAROLA 15 305 IPR014476 GO:0003680
Trre16g01387 305 MobiDBLite consensus disorder prediction 49 63 - -
Trre16g01387 305 Gene3D - 110 241 - -
Trre16g01387 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 286 IPR014476 GO:0003680
Trre16g01387 305 MobiDBLite consensus disorder prediction 233 281 - -
Trre16g01387 305 CDD DUF296 111 178 IPR005175 -
Trre16g01387 305 MobiDBLite consensus disorder prediction 26 101 - -
Trre16g01387 305 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Trre16g01387 305 MobiDBLite consensus disorder prediction 32 48 - -
Trre16g01387 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 223 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01387 Trre-Chr16 10818077 10818994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01387 1 305 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.889 8.91e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01387 - - gmx:100816243 400.208