Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01382 ATGTCTGTTACTCTTCACACTAACCTAGGTGACATCAAATGCGAAATCTTCTGCGACGAGGTCCCTAAAACCTCCGAGAATTTTTTAGCGCTGTGTGCTAGTGGTTACTATGATGGGACTATATTTCACCGCAATATTAAAGGCTTTATGATTCAAGGTGGAGACCCTACTGGTACTGGCAAAGGGGGGACTAGTATATGGGGCAAGAAATTCAACGACGAGATAAGAGAATCATTGAAGCACAATGCAAGGGGAATATTGTCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATCAGTTATGCAAAACAGCCACATTTGAATGGACTATATACTGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCCAACAGGGGCAGGCGATCGACCACTTGCAGAGATAAGGCTCAACCGTGTAACGATGCATTCTAACCCACTTGCTGGTTAG 483 0.4265 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTPTGAGDRPLAEIRLNRVTMHSNPLAG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01382 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Trre16g01382 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Trre16g01382 160 CDD Cyclophilin_PPIL3_like 1 152 - -
Trre16g01382 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Trre16g01382 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Trre16g01382 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Trre16g01382 160 Gene3D - 1 160 IPR029000 -
Trre16g01382 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01382 Trre-Chr16 10795890 10798591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01382 3 157 U-box Gene Family AT5G67530 54.194 6.19e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01382 K12734 - qsu:112008870 320.472