Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01381 ATGATTCAAGGTGGAGACCCAACTGGTGCTGGCAAACGAGGGACTAGTATATGGGGCAAGAAATTCAACGACGAGATAAGAGAATCATTGAAGCACAATGCAAGGGGAATATTGTCAATGGCTAACAGTGGCCCAAATACCAATGGAAGTCAGTTCTTCATCAGTTATTCAAAACAGCCACATTTGAATGGACTATATACTGTGTTTGGAAGAGTAATTCATGGAATTGAAGTTCTTGATCTCATGAAAAAGACTCCAACAGAGATAATTCAGTAA 276 0.3949 MIQGGDPTGAGKRGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYSKQPHLNGLYTVFGRVIHGIEVLDLMKKTPTEIIQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01381 91 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 88 IPR002130 GO:0000413|GO:0003755
Trre16g01381 91 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 87 IPR002130 GO:0000413|GO:0003755
Trre16g01381 91 SUPERFAMILY Cyclophilin-like 1 87 IPR029000 -
Trre16g01381 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Trre16g01381 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Trre16g01381 91 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Trre16g01381 91 Gene3D - 1 91 IPR029000 -
Trre16g01381 91 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 1 88 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01381 Trre-Chr16 10789350 10791489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01381 1 88 U-box Gene Family AT5G67530 57.955 1.39e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01381 K12734 - mof:131166071 171.4