Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01376 ATGGCTGTGAAGGTCACAAAATGGACGAGAACCGATCGAAATATAACGGATCGAATTATCCCTACAACGTGTTACTACTGGTTGAATGGAAGATGCAATCGAAATCCTTGTAGGTTTCTTCACAGCGAACCTCCGTTGCCTTCTACAGCTTCTCGTAGTGTCAGCAACACTGTAAATTGTAATGGAAGGAAGCGATGTTCTTTGTCTGAGTCTGAAAATTCTCTTCCTAACCGTAAACTAAAGGTGGCGGTTTGGAATAGGAAGAGTGGAGATAGTATTGGTAAGACAGAAGTTGTCGAGGCTGCTCAGAGTTCATCGCCTACTTTATGCAAATATTGGATCAATGGAAACTGTGTGAACGGTGATAAATGTAGGGATATACATTCTTGGTTTTCTGGTGATCGGTTATCTGCAGTTACAAATTTTGAAGGACACAAGAAACTTGTCACTGGAATTACACTTCCAGTTGGGACGAACAAACTTTGCTCTGGAAGTACCGATTGCACAGTTCGGATATGGGACTGTTATACTGGTCAGTGTGCTAATGTGATCAATCTTGGTTCTGAAATCAACTCATTGATCAGCGAGGGCCCTTGGATTTTTGTTGGTCTATCAAATACTGTCAAGGCATGGAATATTCAGACTGGTTCACAGTATACTCTTGATGGACCTAACGGGCGAGTCCTTGCCATGATTGTTGGGAACGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAGGGGCATCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGTGTCACTACGTGGCCACGCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCTCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGCATTAAGATTTTGCTAAATATTATTTGTATTTCTCTTGTGTAA 921 0.4256 MAVKVTKWTRTDRNITDRIIPTTCYYWLNGRCNRNPCRFLHSEPPLPSTASRSVSNTVNCNGRKRCSLSESENSLPNRKLKVAVWNRKSGDSIGKTEVVEAAQSSSPTLCKYWINGNCVNGDKCRDIHSWFSGDRLSAVTNFEGHKKLVTGITLPVGTNKLCSGSTDCTVRIWDCYTGQCANVINLGSEINSLISEGPWIFVGLSNTVKAWNIQTGSQYTLDGPNGRVLAMIVGNDTLLAGAEDGVISAWRGISEANSPFKLVVSLRGHAKSVVCLTVGCLNKRLFSGSMDHSIKILLNIICISLV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01376 306 PANTHER - 30 296 IPR044715 -
Trre16g01376 306 SUPERFAMILY WD40 repeat-like 132 296 IPR036322 GO:0005515
Trre16g01376 306 SMART WD40_4 259 298 IPR001680 GO:0005515
Trre16g01376 306 SMART WD40_4 135 174 IPR001680 GO:0005515
Trre16g01376 306 SMART WD40_4 214 251 IPR001680 GO:0005515
Trre16g01376 306 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Trre16g01376 306 SMART c3hfinal6 18 43 IPR000571 GO:0046872
Trre16g01376 306 Pfam CCCH-type zinc finger 109 125 IPR041367 -
Trre16g01376 306 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Trre16g01376 306 ProSiteProfiles Zinc finger C3H1-type profile. 104 131 IPR000571 GO:0046872
Trre16g01376 306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 174 - -
Trre16g01376 306 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
Trre16g01376 306 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Trre16g01376 306 SUPERFAMILY CCCH zinc finger 107 129 IPR036855 GO:0046872
Trre16g01376 306 Gene3D - 16 73 - -
Trre16g01376 306 ProSiteProfiles Zinc finger C3H1-type profile. 23 44 IPR000571 GO:0046872
Trre16g01376 306 Gene3D - 79 300 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01376 Trre-Chr16 10774968 10776278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01376 108 296 Eukaryotic Initiation Factors Gene Family AT2G46290 25.352 6.78e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01376 - - tpra:123898633 441.81