Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01356 ATGGAACTTAAACCTCTTCAAATTGTTCCCTCTTCACACAACAACAACAACACAACTGGAGGTGGACCCCAGAAGAAGATATTTGAGAATGGTGTAGTTGATGAAGTTGTGGTGAAGGAAGAGAAAGAAGAAAACCCTTTGATCACACAAGTTCAAAGGCGTGAGCTTGATCATCAAGTTTTCATCTTTAATCATTTTGCTTATAACCTTCCTCTTCCTTATTACCTTTTGCAATTTCCAAGTAATATGTCAGAGTTCGGTCGTCTAGGTTTTGATCACGTGACTATGGTGGATACAGAACCACATAGGTGTAGAAGAACCGATGGAAAGAAATGGAGGTGTGGTAAGAACACAGTACCTAATCAGAAGTATTGCGAACGCCACATGCATAGGGGTCGAAATCGTTCAAGAAAGCTTGTGGAAACATCTCAACTTAACTCTGCTAATTTGAAAGCAAATCCTAGTATCGGTGGCAAGTCAAATGCAAAATTACATCAGATGACACATTCTGTTTCAAATCCAAACCCTTCTGTCATTCAACACAGTGACGCATTCTCATACACCCCATCGAGGAGCTTCTGTATTGTAAATACATCTTCTGCTTGTGATCGGTCGAGAAATGTCATAGGTTCTGATGTCTCTGTGGTGACTCCTTGCTCCATTCTTTCCCCTGCAGTTGCACCTAAGATAACCACTTTCAGCAGCATGATGGCATCACTTACTTCGGACGACCGAAGTCATTTTAATGTATGCAAGCAAGATGAGCAGATCAAGATGTCTATCAACAGCATGAGTATTAAAAGCGGTACGAAGGGAAGGAATTCATGTGGAATTAATAACATCTCTAATGGAATAGGCTTCTCCCCAAAGAGTGTTCTTCAAGTTTCTGGTTGCAATTATTCATACCTCAACGACAGAAACAGTATAACAATCGAACCTGAACCCGGCAGATGCCGACGAACAGACGGTAAGAAGTGGCGGTGCAAGAGTGCGGTTCTTCCCGGTCAGAAATATTGTGCAACACATATGCATAGAGGTGCGAAAAGGCGTTTTATAAACCATGAACCTCCACCTTCTCCAGCCGCCGCCGTTGCTACTACTACAACTACTACTACTACTATTGGTTCTTCTGTTACCATTGCTTGGCCGCCTTATCCTTCAGCCGAAAGCTCATCAGACATTCAGAAAGCGCATTGTCAACTTCCAAACACAAAGCTTTCAATGTCGGCTCCAGACAGTGCACCTTTTTCCAAACGCAATGAGAAAAGTGGTGGCAGCAGTGACACTGATACTAGTACCACCGTCACAGACACCATCAATGACTATCTTTCTTTCTAA 1338 0.426 MELKPLQIVPSSHNNNNTTGGGPQKKIFENGVVDEVVVKEEKEENPLITQVQRRELDHQVFIFNHFAYNLPLPYYLLQFPSNMSEFGRLGFDHVTMVDTEPHRCRRTDGKKWRCGKNTVPNQKYCERHMHRGRNRSRKLVETSQLNSANLKANPSIGGKSNAKLHQMTHSVSNPNPSVIQHSDAFSYTPSRSFCIVNTSSACDRSRNVIGSDVSVVTPCSILSPAVAPKITTFSSMMASLTSDDRSHFNVCKQDEQIKMSINSMSIKSGTKGRNSCGINNISNGIGFSPKSVLQVSGCNYSYLNDRNSITIEPEPGRCRRTDGKKWRCKSAVLPGQKYCATHMHRGAKRRFINHEPPPSPAAAVATTTTTTTTIGSSVTIAWPPYPSAESSSDIQKAHCQLPNTKLSMSAPDSAPFSKRNEKSGGSSDTDTSTTVTDTINDYLSF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01356 445 PANTHER GROWTH-REGULATING FACTOR 5 297 412 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre16g01356 445 Pfam WRC 100 141 IPR014977 -
Trre16g01356 445 Pfam WRC 313 350 IPR014977 -
Trre16g01356 445 MobiDBLite consensus disorder prediction 405 437 - -
Trre16g01356 445 ProSiteProfiles WRC domain profile. 98 142 IPR014977 -
Trre16g01356 445 ProSiteProfiles QLQ domain profile. 47 82 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g01356 445 ProSiteProfiles WRC domain profile. 312 359 IPR014977 -
Trre16g01356 445 MobiDBLite consensus disorder prediction 1 25 - -
Trre16g01356 445 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01356 Trre-Chr16 10638064 10641273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01356 46 350 GRF Transcription Factor Family AT2G45480 29.248 2.16e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01356 - - mtr:11412908 502.671