Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01355 ATGAGGAGGTTTCTTCACAGCGAACCTCCGTTGCCTTCTACAGCTTCTCGTAGTGTCAGCAACACTGTAAATTGTAATGGAAGGAAGCGATGTTCTTTGTCTGAGTCTGAAAATTCTCTTCCTAACCGTAAACTAAAGGTGGCGGTTTGGAATAGGAAGAGTGGAGATAGTATTGGTAAGACAGAAGTTGTCGAGGCTGCTCAGAGTTCATCGCCTACTTTATGCAAATATTGGATCAATGGAAACTGTGTGAACGGTGATAAATGTAGGGATATACATTCTTGGTTTTCTGGTGATCGGTTATCTGCAGTTACAAATTTTGAAGGACACAAGAAACTTGTCACTGGAATTACACTTCCAGTTGGGACGAACAAACTTTGCTCTGGAAGTACCGATTGCACAGTTCGGATATGGGACTGTTATACTGGTCAGTGTGCTAATGTGATCAATCTTGGTTCTGAAATCAACTCATTGATCAGCGAGGGCCCTTGGATTTTTGTTGGTCTATCAAATACTGTCAAGGCATGGAATATTCAGACTGGTTCACAGTATACTCTTGATGGACCTAACGGGCGAGTCCTTGCCATGATTGTTGGGAACGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAGGGGCATCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGTGTCACTACGTGGCCACGCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCTCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGCATTAAGGTTTGGGATCTTGACACATTTGAGTCTAAAATGACAGTCAATGAGCATACTGTTGTGAATTCGAACCAAAAACACACCAATAAAACCTTAACAAAAGATAAGCATATACTGTTTTGCTCTTGCCGAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGACTATTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGATGGACTCATCTTCACTGGAGATGGAACTGGTTTGGTGACTGTCTCAAAATGGGCGGACTTGTTAATTGTTCCGATTAATGACTGTTCGGTATAG 1095 0.4265 MRRFLHSEPPLPSTASRSVSNTVNCNGRKRCSLSESENSLPNRKLKVAVWNRKSGDSIGKTEVVEAAQSSSPTLCKYWINGNCVNGDKCRDIHSWFSGDRLSAVTNFEGHKKLVTGITLPVGTNKLCSGSTDCTVRIWDCYTGQCANVINLGSEINSLISEGPWIFVGLSNTVKAWNIQTGSQYTLDGPNGRVLAMIVGNDTLLAGAEDGVISAWRGISEANSPFKLVVSLRGHAKSVVCLTVGCLNKRLFSGSMDHSIKVWDLDTFESKMTVNEHTVVNSNQKHTNKTLTKDKHILFCSCRDNSVRLYELPSFSERGRLFARQEVRSIEKGPDGLIFTGDGTGLVTVSKWADLLIVPINDCSV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01355 364 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Trre16g01355 364 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Trre16g01355 364 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Trre16g01355 364 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Trre16g01355 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 266 - -
Trre16g01355 364 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Trre16g01355 364 SUPERFAMILY WD40 repeat-like 99 352 IPR036322 GO:0005515
Trre16g01355 364 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01355 364 Pfam CCCH-type zinc finger 74 90 IPR041367 -
Trre16g01355 364 SUPERFAMILY CCCH zinc finger 72 94 IPR036855 GO:0046872
Trre16g01355 364 Gene3D - 42 221 IPR015943 GO:0005515
Trre16g01355 364 SMART WD40_4 224 263 IPR001680 GO:0005515
Trre16g01355 364 SMART WD40_4 266 310 IPR001680 GO:0005515
Trre16g01355 364 SMART WD40_4 179 216 IPR001680 GO:0005515
Trre16g01355 364 SMART WD40_4 100 139 IPR001680 GO:0005515
Trre16g01355 364 Gene3D - 222 357 IPR015943 GO:0005515
Trre16g01355 364 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Trre16g01355 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 139 - -
Trre16g01355 364 Pfam WD domain, G-beta repeat 226 263 IPR001680 GO:0005515
Trre16g01355 364 Pfam WD domain, G-beta repeat 104 139 IPR001680 GO:0005515
Trre16g01355 364 PANTHER - 289 352 IPR044715 -
Trre16g01355 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Trre16g01355 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01355 Trre-Chr16 10631822 10636346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01355 73 267 Eukaryotic Initiation Factors Gene Family AT2G46290 26.027 2.31e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01355 - - tpra:123898633 504.597