Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01353 ATGGCTTTGGCAATTATGATAGCATCTTGGACTTGTTTGTGCATTGCAATTATATCCGTTGCAACATCAGAATCATCAAAACTAATACAAGAGATAGAAGGAGAAGCTCTTGTTAATAGTGGTTGGTGGAATGATATCACTAACTATGCTCCAACTCATTGTCAATGGCCAGGTATAACATGCAATAATGAAGGAAGCATTACAAACATTTCTTTGCCACTTGAAATTCAATTAGGAAACAAGTTTAGTAAATTCAACTTCTCTTCTTTCAAAAATCTTGTTCATCTTAATCTACATTCACATGGAATCATTGGTAACATTCCATTTCAACTAGCTACTCTTTCCAAACTCACCTTTCTCGACCTTTCTTCTAATGATATTGAAGGTCATATACCATCAAATATTTGGAGTTTAAAGAATTTAATCACACTTAACCTTTCTAATAATAAGCTTAATGGTTCTATTTCATCTTTTGTGGGACAGTTGACTAAGTTGACTTTTTTATATCTTGATACTAATATGTTTGATGGGTCTATTCCTCTTGAGTTAGGAGGGTTGAAAAATTTGATCCATTTGGGTTTGAGTAGTAATAGTTTTATTGGTTTAATACCTTTTGAAATTGGTCTATTGAAAAGTTTGAAATATTTGTCTCTTAGTATGAACAAGTTGAATGGTTCTATACCTTTAGAAATAGGGAATTTGAACAACCTTTTATTTCTTGATCTTAGTGACAATAATCTAAGTGGTGAATCACTTTCTTTTTTGTATAATTTGATTAATTTGGTTGAGCTAAACTTGTCAAACAATGACATTTCTAGTATTGTCTCACATGAAATTGCAAAAATAACCCAATTGGAGTATCTCAAAATTTCAAATAACAAATTTTTTGGTACAATACCTTTTGAGATTGGAAAATTGTCCAAAATATTGGTTCTAGACATTTCTAGAAACATGTTTCATGGAAGCATTCCTTCTCATATTGGTGAGCTTGTTAATCTTGATTTAATTGATTTAATTGATTTAAGTCATAACTTAATTAGTGGCAAAATACCTTATCAACTTGGGAATGTGAAATACACAAGAGTATTGGATCTTAGTTTTAATCAACTCATTGGAACCATTCCAAGTTCATTAGTATTATTGAGGAAGATTAACTTGTCCTATAATTCTCTAGAGGGTGATATTCCTTCAAGTCTTCAAGATTCTGTCGCGCCAGACGCGTTTATCGGAAATGAGTTTTTATGTAACCAATTCAGACATCCCGATACTACTTGTTACTCCTCACCTTCAAAAAGTAGACTTAGGACTCATATGAAGATTTTCCTTCCACTTATAGCTTTTCTTGCTCTTATATGCTCTTTGTATGTGTTCTTATGCTGGTGTAAGGCATGTAGTTTCATGTCTAGGACAAAAGATATGAAGAATGGTGACTTTTTTTCAATATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTAAAGCAACAAATGATTTTGATATCGAATATTGCATCGGAACTGGTGGTTATGGTAGTGTCTACAAAGCAAAGTTACCTAGTGGTAGAGTAGTGGCATTGAAGAAACTCCACAATTTAGAAGCTAATGAACCATTGATTAGAAAGATTTTTAAGAATGAGGTGAGAATGTTGACAAAGATAAGGCATAGAAGTATTTTGAAGCTATATGGTTTTTGTTTGCACAATAGATGCATGTTTTTGGTTTTGGAATACATGGAAAAGGGAAGTTTGTATTGTGTTCTACACAATGATGTTGAAGCAGTGGAATTGGATTGGAGTAAGAGGGTTGACATTGTGAATAGAATTGCACATAGCTTATCATACCTTCATTATGATTGCAATCCAGCAATCATTCATAGAGATGTGACAACAAAAAATGTGCTGTTGAACTCAGAAATGGAAGCTTGTCTTTCCGACTTTGGCATAGCGAGACTTCAAAATTCTAGTTCGTCAAATGAAACAATACTTGCGGGCACTTATGGATATCTTGCACCAGAACTTGCTTATACTGATAGTGTGACTGAGAAATGTGATGTGTACAGCTTTGGAGTGGTTGCTCTTGAAATTATAATGGGAAAACATCCAGGAGAACTTGTTTCATCATTAAGATTTGCATCCACTGGAAATATTCTCCTTAAAGATTTATTAGACAAGAGATTAATAGCAACCATAAATCAGCAATCTTCTCAAAGTTTAGCTCTTATAGCAACATTAGCCTTTGCATGTCTTCATTCTCATCCAAGGGATAGACCAACAATGCAAATAGTGTGTGACAAACTTGTCACAGGAAAACCCTCATTAACCAAACCATATGAAGAAATTTCTATAAGGGAGATGTTAAATCAGGAATTATAA 2376 0.3316 MALAIMIASWTCLCIAIISVATSESSKLIQEIEGEALVNSGWWNDITNYAPTHCQWPGITCNNEGSITNISLPLEIQLGNKFSKFNFSSFKNLVHLNLHSHGIIGNIPFQLATLSKLTFLDLSSNDIEGHIPSNIWSLKNLITLNLSNNKLNGSISSFVGQLTKLTFLYLDTNMFDGSIPLELGGLKNLIHLGLSSNSFIGLIPFEIGLLKSLKYLSLSMNKLNGSIPLEIGNLNNLLFLDLSDNNLSGESLSFLYNLINLVELNLSNNDISSIVSHEIAKITQLEYLKISNNKFFGTIPFEIGKLSKILVLDISRNMFHGSIPSHIGELVNLDLIDLIDLSHNLISGKIPYQLGNVKYTRVLDLSFNQLIGTIPSSLVLLRKINLSYNSLEGDIPSSLQDSVAPDAFIGNEFLCNQFRHPDTTCYSSPSKSRLRTHMKIFLPLIAFLALICSLYVFLCWCKACSFMSRTKDMKNGDFFSIWNYDGKIAYEDIIKATNDFDIEYCIGTGGYGSVYKAKLPSGRVVALKKLHNLEANEPLIRKIFKNEVRMLTKIRHRSILKLYGFCLHNRCMFLVLEYMEKGSLYCVLHNDVEAVELDWSKRVDIVNRIAHSLSYLHYDCNPAIIHRDVTTKNVLLNSEMEACLSDFGIARLQNSSSSNETILAGTYGYLAPELAYTDSVTEKCDVYSFGVVALEIIMGKHPGELVSSLRFASTGNILLKDLLDKRLIATINQQSSQSLALIATLAFACLHSHPRDRPTMQIVCDKLVTGKPSLTKPYEEISIREMLNQEL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01353 791 FunFam Leucine-rich repeat receptor protein kinase MSP1 464 578 - -
Trre16g01353 791 Gene3D Ribonuclease Inhibitor 339 415 IPR032675 -
Trre16g01353 791 SUPERFAMILY Protein kinase-like (PK-like) 479 767 IPR011009 -
Trre16g01353 791 Gene3D Ribonuclease Inhibitor 276 337 IPR032675 -
Trre16g01353 791 Gene3D Ribonuclease Inhibitor 177 275 IPR032675 -
Trre16g01353 791 Gene3D Phosphorylase Kinase; domain 1 462 578 - -
Trre16g01353 791 FunFam Nuclear pore complex protein NUP107 30 181 - -
Trre16g01353 791 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Trre16g01353 791 FunFam Leucine-rich repeat receptor protein kinase EMS1 203 300 - -
Trre16g01353 791 Pfam Leucine Rich Repeat 381 400 IPR001611 GO:0005515
Trre16g01353 791 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Trre16g01353 791 Pfam Protein kinase domain 505 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01353 791 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 192 768 - -
Trre16g01353 791 ProSiteProfiles Protein kinase domain profile. 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01353 791 SUPERFAMILY L domain-like 36 338 - -
Trre16g01353 791 ProSitePatterns Tyrosine protein kinases specific active-site signature. 624 636 IPR008266 GO:0004672|GO:0006468
Trre16g01353 791 ProSiteProfiles Leucine-rich repeat profile. 260 281 IPR001611 GO:0005515
Trre16g01353 791 SUPERFAMILY L domain-like 339 399 - -
Trre16g01353 791 SMART LRR_typ_2 378 410 IPR003591 -
Trre16g01353 791 SMART LRR_typ_2 258 281 IPR003591 -
Trre16g01353 791 SMART LRR_typ_2 114 138 IPR003591 -
Trre16g01353 791 SMART LRR_typ_2 162 186 IPR003591 -
Trre16g01353 791 SMART LRR_typ_2 210 234 IPR003591 -
Trre16g01353 791 ProSiteProfiles Leucine-rich repeat profile. 236 256 IPR001611 GO:0005515
Trre16g01353 791 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Trre16g01353 791 FunFam Leucine-rich repeat receptor-like protein kinase 579 777 - -
Trre16g01353 791 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01353 Trre-Chr16 10628858 10631604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01353 91 672 Receptor kinase-like Gene Family AT4G08850 37.097 1.94e-120 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g01353 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01353 - - aprc:113863342 1043.88