Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01352 ATGCAGAAAGCTTGGTTCTATGAGGAGTATGGTCCTAAGGAAGTCCTTAAGCTAGGGGACTTACCTATTCCATCTCCTCTTCATAACCAACTACTTGTCCAAGTTCGTGCTGCTGCTTTGAATCCCATCGACTCAAAGAGGCGTTTGCGTCCTATTTTCCCTTCCAAGTTTCCTGTGGTTCCTGGATGTGACATGGCTGGAGTGGTGATAGGAAAAGGCATTCATGTCAAAAAATTTGACATTGGTGATGAAGTCTATGGCAACATACAAGATTTCAATAATACCGATGAAAAGCCAAAGCAACTTGGAACATTGGCACAGTTCATTGTTGTGGAAGAGAACTTAGTTGCAAGAAAACCAAAATGTCTTTCATTTGAGGAAGCTGCAAGTTTGCCATTGGCAGTTCAAACAGCAATTGAAGGATTCAAAACTGGTGATTTTAAGAAAGGTGAGACAATGTTTGTGGTTGGTGGAGCAGGTGGTGTTGGAACTTTAGTTCTTCAGTTGGCTAAGCTTATGTTTGGAGCTTCCTATGTTGTGTCTTCATGTAGCACACCTAAAGTGAAATTTGTGAAGCAATTTGGTGCTGATGAAGTGGTGGATTATACTAAGACTAAATATGAAGACATTGAGGAGAAATTTGATTTTCTTTATGATACAGTTGGTGATTGCAAGAAATCTATTGTGGTAGCAAAGAAAGATGGAGCAATTGTGGACATAACATGGCCACCATCACATCCAAGAGCAGTTTATTCAAGTTTGAGTGTATCTGGTGAAATCTTGGAAAATCTGAGACCATATTTGGAAAGAGGAGAATTAAAAGCAGTGATTGATCCAAAAGGTAAATATGATTTTGAGAATGTGATTGAAGCTTTTGGTTACATAGAAACTGGAAGAGCTTGGGGAAAAGTTGTTGTGTCATGCTTCCCTAATAATAATAATATTAATATGGAGAATATTAGTAATCCTCATATTAATCACTCTTCCATTTTATCTGAGATTGATACCAACATACAACATGTCAATGGTAATTTGGAAAAAGATCTTGATTGTCTCAAGTAA 1062 0.3776 MQKAWFYEEYGPKEVLKLGDLPIPSPLHNQLLVQVRAAALNPIDSKRRLRPIFPSKFPVVPGCDMAGVVIGKGIHVKKFDIGDEVYGNIQDFNNTDEKPKQLGTLAQFIVVEENLVARKPKCLSFEEAASLPLAVQTAIEGFKTGDFKKGETMFVVGGAGGVGTLVLQLAKLMFGASYVVSSCSTPKVKFVKQFGADEVVDYTKTKYEDIEEKFDFLYDTVGDCKKSIVVAKKDGAIVDITWPPSHPRAVYSSLSVSGEILENLRPYLERGELKAVIDPKGKYDFENVIEAFGYIETGRAWGKVVVSCFPNNNNINMENISNPHINHSSILSEIDTNIQHVNGNLEKDLDCLK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01352 353 CDD MDR_like_2 3 306 - -
Trre16g01352 353 Gene3D - 142 257 - -
Trre16g01352 353 Pfam Zinc-binding dehydrogenase 195 306 - -
Trre16g01352 353 SMART PKS_ER_names_mod 11 306 IPR020843 GO:0016491
Trre16g01352 353 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 308 IPR044626 GO:0016628
Trre16g01352 353 Gene3D - 9 306 - -
Trre16g01352 353 Pfam Alcohol dehydrogenase GroES-like domain 29 88 IPR013154 -
Trre16g01352 353 SUPERFAMILY GroES-like 2 155 IPR011032 -
Trre16g01352 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 123 265 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01352 Trre-Chr16 10625094 10627048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01352 2 221 Monolignol Biosynthesis Gene Families AT3G19450 25.610 3.37e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01352 K18980 - cave:132187488 480.33