Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01351 ATGAAAATGCAGAAAGCTTGGTTCTATGAGGAGTATGGTCCTAAGGAAGTCCTTAAGCTAGGGGACTTACCTATTCCATCTCCTCTTCATAACCAACTACTTGTCCAAGTTCGTGCTGCTGCTTTGAATCCCATCGACTCAAAGAGGCGTTTGCGTCCTATTTTCCCTTCCAAGTTTCCTGTGGTTCCTGGATGTGACATGGCTGGAGTGGTGATAGGAAAAGGCATTCATGTCAAAAAATTTGACATTGGTGATGAAGTCTATGGCAACATACAAGATTTCAATAATACCGATGAAAAGCCAAAGCAACTTGGAACATTGGCACAGTTCATTGTTGTGGAAGAGAACTTAGTTGCAAGAAAACCAAAATGTCTTTCATTTGAGGAAGCTGCAAGTTTGCCATTGGCAGTTCAAACAGCAATTGAAGGATTCAAAACTGGTGATTTTAAGAAAGGTGAGACAATGTTTGTGGTTGGTGGAGCAGGTGGTGTTGGAACTTTAGTTCTTCAGTTGGCTAAGCTTATGTTTGGAGCTTCCTATGTTGTGTCTTCATGTAGCACACCTAAAGTGAAATTTGTGAAGCAATTTGGTGCTGATGAAGTGGTGGATTATACTAAGACTAAATATGAAGACATTGAGGAGAAATTTGATTTTCTTTATGATACAGTTGGTGATTGCAAGAAATCTATTGTGGTAGCAAAGAAAGATGGAGCAATTGTGGACATAACATGGCCACCATCACATCCAAGAGCAGTTTATTCAAGTTTGAGTGTATCTGGTGAAATCTTGGAAAATCTGAGACCATATTTGGAAAGAGGAGAATTAAAAGCAGTGATTGATCCAAAAGGTAAATATGATTTTGAGAATGTGATTGAAGCTTTTGGTTACATAGAAACTGGAAGAGCTTGGGGAAAAGTTGTTGTGTCATGCTTCCCTAATAATAATAATATTAATATGGAGAATATTAGTAATCCTCATATTAATCACTCTTCCATTTTATCTGAGATTGATACCAACATACAACATGTCAATGGTAATTTGGAAAAAGATCTTGATTGTCTCAAGTAA 1068 0.3764 MKMQKAWFYEEYGPKEVLKLGDLPIPSPLHNQLLVQVRAAALNPIDSKRRLRPIFPSKFPVVPGCDMAGVVIGKGIHVKKFDIGDEVYGNIQDFNNTDEKPKQLGTLAQFIVVEENLVARKPKCLSFEEAASLPLAVQTAIEGFKTGDFKKGETMFVVGGAGGVGTLVLQLAKLMFGASYVVSSCSTPKVKFVKQFGADEVVDYTKTKYEDIEEKFDFLYDTVGDCKKSIVVAKKDGAIVDITWPPSHPRAVYSSLSVSGEILENLRPYLERGELKAVIDPKGKYDFENVIEAFGYIETGRAWGKVVVSCFPNNNNINMENISNPHINHSSILSEIDTNIQHVNGNLEKDLDCLK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01351 355 CDD MDR_like_2 5 308 - -
Trre16g01351 355 Gene3D - 11 308 - -
Trre16g01351 355 Pfam Zinc-binding dehydrogenase 197 308 - -
Trre16g01351 355 SMART PKS_ER_names_mod 13 308 IPR020843 GO:0016491
Trre16g01351 355 Pfam Alcohol dehydrogenase GroES-like domain 31 90 IPR013154 -
Trre16g01351 355 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 3 310 IPR044626 GO:0016628
Trre16g01351 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 125 267 IPR036291 -
Trre16g01351 355 SUPERFAMILY GroES-like 3 157 IPR011032 -
Trre16g01351 355 Gene3D - 144 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01351 Trre-Chr16 10625088 10627048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01351 4 223 Monolignol Biosynthesis Gene Families AT3G19450 25.610 3.40e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01351 K18980 - cave:132187488 480.33