LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01345	ATGCCATCCCGTCCGCCGCCACAACAACCACCTCTTCCAACCGCCCACCACCACCACCGTCAAATGATCCTCGGCAGCTGCATCGCTGCCGCCGTCTTCCTAACAGCTGCAATAATCTCTTTCGTAATCTTCCTCTACCGTAAACTATCACACAACCGAACAACACCGTTCGAACAAAGCCAAAGAAGATTCTCTTACTCCGTTCTCCGTCGTGCTTCAAATTCATTCTCACCTTCAACTCGTCTCGGTCATGGCGGTTTCGGTTCAGTTCACAAAGCTACTCTTCCGTCCGGCGAAACTGTCGCTTTGAAAGTAATGGATTCACCTGGTTCGATTCAAGGTGAGAGAGAGTTTCATAATGAACTTTCTCTTTGTTCAAATCTGAATTCACCGTTCATTCTTTCACTTCTCGGTTATTCTTCTGACCGGTCCGGGAAAAAGCTTGTTTTGGTTTATGAACTTATGGTGAACCGGAGTCTTCAAGATGCGCTATTGGACCGGCGGTGTGTTGAATTGATGTGTTGGTCGAACCGGTTCGATGTTGTTGTTTCGGTTGCTAAAGGACTTGAGTATCTTCATCATCAATGTCATCCTCCGGTGATTCATGGTGATATTAAACCAAGTAATGTTCTTTTGGATCGTGAATTTAGGGCTAAAATTGGGGATTTTGGTCTTGCTAGAGTTAAGTGTTTGGAAGATTCTGGAATGGAAATGATGGTTGAAGAGATTCATGTGAAGAAAAAAAGAGAGGATCTTGTTGTTGGTGGTGGTGGTGTTGAGGATTGTAGTTCTGTTTCTGTTGTTGAAGAATTTGAGAGTGTTGTTACTAATACTACTGTTGGATTTGATGTTGATCGGTCGCCGGAGAGTTGTAATGTGAGGGTTTTGGATTCCGATGCTGCTTCGCCTGAGGTTTTGCTTTCGCCGGAGGTGGGGGTTGTGTCGCCGGAGATGAATGGGGTTGAGAAATTAAGTGTTGTGTCTGATGGTTGTTTTGATAAGTTTAGTATTGATAGTGGGAATCAGAGGAAGAGAGGTGGTGGTGGTTGTGGTGGTTCTGGGAGGGATTGGTGGTGGAAGCAAGAGAATAATGGGGGAGGATCTGAATCAGGGAGGGTGAAGGATTATGTTATGGAGTGGATTGGGAGTGAGATAAAGAAAGAGAGACCTAAGAGTAGTGAATGGGTTGGTTCTGGTTCATCGATTTGTTCCGGTGGTGATGCGGCTGCACCGTCGAAGGTGGAGGGTAAGAAGAAACAGAGGAAGAAATTGGAATGGTGGGCTTCACTTGATGAGGAGAAGGGTAAAGGGAAGAAGAATAGGAAACCAAGGGAATGGTGGAAGGAGGAGTTTTGTGAGGAGCTTTCAAAGAAGAGTAGGAAGAAAAAGAGAAGTCTTGATTGTCGCAGCGGTGGGGAATCGTGGTGGCAAAGAGACGAGGATGCAGGTAATGCGGCGGTGGAGAAGAAGAAAAAGAGAAAAAGTAAGAGTAGTAGAGGAAGTATTGATTGGTGGTTGGATGGATTAAGTGGTGAGCTTAGAAATAATGGAAGAAGAAATAGTCAAGATTGGGGTAATGGTGATGTACCAAAGAGTGGTGGAATAAGTAGCACACCAAGTATGAGAGGAACAGTTTGTTACATTGCTCCTGAATATGGTGGTGGTGGACAATTATCTGAGAAATGTGATGTGTATAGTTTTGGTGTTCTACTTTTGGTTTTGGTTGCTGGAAGAAGACCACTTCAAGTAACAGCATCACCAATTTCAGAATTTGAGAGAGCAAATCTAATTTCATGGGCTAGACAACTTGCTCATAATGGAAAACTATTGGATCTTGTTGATAGTTCTATTCATTCTTTGGATAAAGAACAAGCATTGCTTTGTATCACCATTGCATTGTTGTGTTTGCAGAGATCACCTGGGAAAAGACCTTCCATGAAAGAGATTGTTGGAATGCTTTCGGGTGAAGCTGACCCTCCTCATTTACCCTTTGAATTCTCACCTTCACCACCCTCTAATTTCCCTTTCAAATCAAGGAAAAAGGCTAGGTGA	2052	0.4391	MPSRPPPQQPPLPTAHHHHRQMILGSCIAAAVFLTAAIISFVIFLYRKLSHNRTTPFEQSQRRFSYSVLRRASNSFSPSTRLGHGGFGSVHKATLPSGETVALKVMDSPGSIQGEREFHNELSLCSNLNSPFILSLLGYSSDRSGKKLVLVYELMVNRSLQDALLDRRCVELMCWSNRFDVVVSVAKGLEYLHHQCHPPVIHGDIKPSNVLLDREFRAKIGDFGLARVKCLEDSGMEMMVEEIHVKKKREDLVVGGGGVEDCSSVSVVEEFESVVTNTTVGFDVDRSPESCNVRVLDSDAASPEVLLSPEVGVVSPEMNGVEKLSVVSDGCFDKFSIDSGNQRKRGGGGCGGSGRDWWWKQENNGGGSESGRVKDYVMEWIGSEIKKERPKSSEWVGSGSSICSGGDAAAPSKVEGKKKQRKKLEWWASLDEEKGKGKKNRKPREWWKEEFCEELSKKSRKKKRSLDCRSGGESWWQRDEDAGNAAVEKKKKRKSKSSRGSIDWWLDGLSGELRNNGRRNSQDWGNGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGKLLDLVDSSIHSLDKEQALLCITIALLCLQRSPGKRPSMKEIVGMLSGEADPPHLPFEFSPSPPSNFPFKSRKKAR	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01345	683	Gene3D	Phosphorylase Kinase; domain 1	41	154	-	-
	Trre16g01345	683	PANTHER	OS07G0586332 PROTEIN	1	683	IPR044576	-
	Trre16g01345	683	SUPERFAMILY	Protein kinase-like (PK-like)	50	672	IPR011009	-
	Trre16g01345	683	MobiDBLite	consensus disorder prediction	388	420	-	-
	Trre16g01345	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	200	212	IPR008271	GO:0004672\|GO:0006468
	Trre16g01345	683	MobiDBLite	consensus disorder prediction	661	683	-	-
	Trre16g01345	683	Gene3D	Transferase(Phosphotransferase) domain 1	508	659	-	-
	Trre16g01345	683	Gene3D	Transferase(Phosphotransferase) domain 1	155	307	-	-
	Trre16g01345	683	Pfam	Protein kinase domain	538	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01345	683	Pfam	Protein kinase domain	79	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01345	683	MobiDBLite	consensus disorder prediction	469	488	-	-
	Trre16g01345	683	ProSitePatterns	Protein kinases ATP-binding region signature.	82	104	IPR017441	GO:0005524
	Trre16g01345	683	FunFam	Os07g0541700 protein	155	242	-	-
	Trre16g01345	683	MobiDBLite	consensus disorder prediction	469	494	-	-
	Trre16g01345	683	MobiDBLite	consensus disorder prediction	516	537	-	-
	Trre16g01345	683	SMART	serkin_6	76	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01345	683	ProSiteProfiles	Protein kinase domain profile.	76	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01345	Trre-Chr16	10557713	10559764	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01345	513	653	Receptor kinase-like Gene Family	AT3G58690	35.570	9.23e-15	75.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Trre16g01345		Pkinase	2.4e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01345	-		-	aip:107626015	879.011