Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01322 ATGGGTAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATTAACCGGCAAGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTATGTGATGCTGAAGTTGCTCTTATCATTTTCTCTAGCCGTGGAAAACTCTATGAATTTGGAAGTGTTGGCACTACCAAAACTATTGAGAGATACCAACGGTGCTCATTTAATCCTCAACAAGATGATCACCAAATTGATTGTGATACCCAGAGTTGGTACCAAGAGGTGTCTAAGCTGAAGGCAAAGTATGAGTCTCTTCAAAAGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATGAAGGAGCTGCAGAATCTTGAGAAACAACTTGAAGGTGCTTTAGCACAAGCAAGGCAAAGAAAGACTCAAATTATGATTGAACAAATGGAAGAGCTTCGCAAAAGGGAACGCGATTTAGGAGACATGAACAAACAACTAAGACTCAAGCTTGAAAGCGAGGGATTTAATCTTAAAGCTGTGGAAAACTTGTGGAGTTCTAATTCAATTGCTGGAAATAGCAACTTTACCTTTCAGCCACATCAAACCAACCCTATGACTATGAATATGGATATTCATGCAGAACCCTTTTTGCAAATAGGATACCAACAGTATGTTCAAGCTGAGGCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCATGGATGGATCCTTTGA 750 0.396 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKYESLQKTQRQLLGEDLGPLNMKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERDLGDMNKQLRLKLESEGFNLKAVENLWSSNSIAGNSNFTFQPHQTNPMTMNMDIHAEPFLQIGYQQYVQAEASNVSKSMACETNFMHGWIL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01322 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Trre16g01322 249 FunFam MADS-box transcription factor 1 13 84 - -
Trre16g01322 249 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Trre16g01322 249 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Trre16g01322 249 Coils Coil 121 144 - -
Trre16g01322 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01322 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 Coils Coil 94 114 - -
Trre16g01322 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre16g01322 249 Coils Coil 150 170 - -
Trre16g01322 249 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01322 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01322 Trre-Chr16 10407700 10418009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01322 1 249 MADS-box Gene Family AT2G45650 65.370 1.06e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre16g01322 K-box 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01322 K09264 - gmx:100820061 408.683