Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01320 ATGGTTCGAGGAAAAACTCAAATGAAGCGTATAGAAAATGCAACAAGTAGACAAGTAACATTTTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCCTTTGTGTTGTCAGTGTTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGTGTTTCAGAAACAATTGGACGATACCGCAGTCATACCAGGATTAATAATACTTCAACAACATCTGAATCAATTGAAAATACTCAGCATTTGAAGGAAGAAGTAGAAAACATGAGGAGGAAGATTGACCTTCTTGAGAATTCAAAACGGAAACTCTTAGGAGATGGTTTGGGATCTTGTTCCATTGATGAACTACAAAAAATAGAGCAACAGTTGGAGAAAAGTATAAACAAAATTCGAACAAAAAAGACTCAAGTTTTCAGGGAACAAATTGAGCAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGTCAAGCTCACTGAGAAGTATGGTAACTATTCATCACAAGCAGCAAAAAAGGATCAAAGAGAAAATATACATGAAGCTGAAACCTATGCAGATCAAAGCAGTCCAAGTTCAGATGTCGAGACTGAATTGTTCATTGGACTTCCAGAAACAAGAACAAGGCGCATTCCTCCAAAGTTCTAA 675 0.3659 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFVLSVLCDAEVALIVFSPRGRLYEFASSSVSETIGRYRSHTRINNTSTTSESIENTQHLKEEVENMRRKIDLLENSKRKLLGDGLGSCSIDELQKIEQQLEKSINKIRTKKTQVFREQIEQLKEKEKALVAENVKLTEKYGNYSSQAAKKDQRENIHEAETYADQSSPSSDVETELFIGLPETRTRRIPPKF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01320 224 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Trre16g01320 224 Coils Coil 88 115 - -
Trre16g01320 224 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Trre16g01320 224 MobiDBLite consensus disorder prediction 176 204 - -
Trre16g01320 224 FunFam Agamous-like MADS-box protein AGL13 13 80 - -
Trre16g01320 224 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01320 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 Gene3D - 14 111 IPR036879 GO:0003677|GO:0046983
Trre16g01320 224 Coils Coil 122 171 - -
Trre16g01320 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01320 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01320 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01320 Trre-Chr16 10386835 10396693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01320 1 159 MADS-box Gene Family AT2G45660 72.956 8.25e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre16g01320 K-box 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01320 - - psat:127075834 337.035