Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01317 ATGGTTCGAGGAAAAACTCAAATGAAGCGTATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCCTTTGAGTTGTCAGTGTTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGCACTCCAGAAACAATTGAACGATACAGAAGCCATAACAGGATAAATAATATACAAATGACATCTGAATCAGTTGAGAATACTCAGCATTTGAGGCAAGAAGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTTGGGTCTTGTTCCATTGATGAACTAAATAGGATAGAACAACAGTTAGAGAAGAGTATAATCAAAATTCGAGCAAAAAAGACTCAAGTTTTCAAGGAACAAATTGAACATCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGCCAAGCTATCTGAGAAGTATGGTAACTATTCATCAGAAGCAGCAAAAAAGGATCAAAGAGAAAATATACATGAAGCTGAACCCTATGCAGATCAAAGCAGTCCAAGTTCAGATGTAGAGACTGAATTATTCATTGGACTTCCAGAAACAAGAACAAGGCGCATTCCTCCAAAGTTCTAA 675 0.3659 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSTPETIERYRSHNRINNIQMTSESVENTQHLRQEAENMMKKIDLLETSKRKLLGEGLGSCSIDELNRIEQQLEKSIIKIRAKKTQVFKEQIEHLKEKEKALVAENAKLSEKYGNYSSEAAKKDQRENIHEAEPYADQSSPSSDVETELFIGLPETRTRRIPPKF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01317 224 Coils Coil 122 145 - -
Trre16g01317 224 Coils Coil 88 115 - -
Trre16g01317 224 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Trre16g01317 224 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Trre16g01317 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Trre16g01317 224 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Trre16g01317 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01317 224 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre16g01317 224 Coils Coil 151 171 - -
Trre16g01317 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 MobiDBLite consensus disorder prediction 176 192 - -
Trre16g01317 224 MobiDBLite consensus disorder prediction 174 206 - -
Trre16g01317 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01317 224 FunFam MADS-box transcription factor 1 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01317 Trre-Chr16 10350055 10360226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01317 1 159 MADS-box Gene Family AT2G45660 73.585 9.67e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre16g01317 K-box 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01317 - - psat:127075834 341.273