Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01313 ATGGATAATCATGGGTCTTCACCACCACCATATGGATATCCAAACCCTTATGGATACCCTCCATATCCATATCCACCTCCACCACCACCTCCAAATCAATCTCAAGGTCCTTCTGATCAATATCCATATCCATATCCACCTACAAGTACTAATCCTTATTCATATGAATCAACATATCCACCAAATCCTTCACATTCCACAAACTACTCTTACTCTTATCCACCACCTCCTCCTCCTCCACCAAACCCTTTAGAATATCAAACTCATCAACCATCTAATGTTTATCCTTATCCTTACCCTTACCCTCAACATTACCAATACCCTCCAATAAGTGATGATTCTAACTCTCCTCATGCTTCTGCTTATCCTCCTTTGAATGATCTTATGAGCAATGTTCAGATATCTGATAACACGCCAAGTGCACCGCCAGTTCGTGCACCGCCAGCACGTGTAATGGCACTTTCTCCAATAATAACACATTCCTATTCAGCTTTAAATGAAGAGAAGAAAGAAGAGTTTTATGGTCATACCAGTAATAATTCTTTTTCAGGTTTTGAACATTCTTATTCTAGTTTGGGGGATTCACCAAACCTTTCGGGTTATTCTGGTGGTTCATTTGATGACTTGGTTCACAACCAAAGTTTGCAGATTGTTCCGGTTCAGAGTAAAGGGTCATTGAGAGTTTTGCTCTTGCATGGTAATTTAGATATATGGGTTCATGGAGCTAAGAATCTTCCAAATATGGACATGTTTCATAAAACTTTAGGTGATATGTTTGGTAAGTTTCCCGGTAATGTTAGTAACAAGATTGAGGGATCAATGAGTAGGAAGATTACTAGTGATCCTTATGTGACAATTTCTTTGTCAAATGCGGTAGTTGGTAGGACATTTGTGATTAGTAATAGTGAAAATCCTGTTTGGGAGCAGCATTTTCATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTTAAGGATAGTGATGTGGTAGGTTCACAGCTTATTGGTGTTGTGGCGATTCCAGTCGAACAATTATACTCAGGTGAAAAAGTACAAGGGACTTACCCTATTCTTAATAGCAATGGGAAGCCTTGTAAGCAAGGTGCTGTTTTGAGTGTTTCCATTCAATTCATTCCAATAGAGAATCTGATCATGTATCATCAAGGCGTTGGAGCAGGGCCGGACTATTTTGGTGTGCCGGGAACATATTTTCCATTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATGTTCCGGATGGAAGTCTCCCTAATGTAATACTTGATCATGGGATGTATTATGCTCATGGACAGTGTTGGCGTGATATCTTTGAAGCCATACGTCAGGCAAAGCGTTTGGTTTACATTACTGGGTGGGCAGTGTGGCACAAAGTTAGGTTGATAAGGGACGCTACTAGTCGTAGTCATGCTTCAGAATACACGCTCGGTGATCTTCTGAGGTCTAAGTCTCAGGAAGGAGTAAGAGTGCTTCTTCTTGTTTGGGATGACCCTACCTCAAGAAACATTCTTGGTTATAAAACAGATGGTGTCATGGCGACACATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTACTTTGTCCTCGCATGGCAGGAAAACGACATAGCTGGGCTAAGCAACAGGAAGTTGGAACAATATATACACATCATCAGAAGACTGTAATTGTAGATGCTGATGCTGGAAATAACAGGAGAAAAATTGTAGCCTTTGTTGGTGGACTTGATTTATGTGACGGACGATATGATACTCCCCAACATCCGCTCTTTAGGACACTGAAGACACTGCATAAGGATGATTATCACAATCCTACTTTCACGGGTAATACTGGCGGCTGTCCGCGGGAACCATGGCACGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATGTTTTGACAAACTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTACAGGGATAAAAAAGTTGAAGAGTTTATATGATGATGCTTTGCTTAAAATAGAAAGAATTCCAGATATTCTCCGTATTTCAGACATTCCTAGTATTGGTGATGATAATCCTGCATCTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAACTCTGTCAAGGGATTTCCAAAGGAGCCAAAAGATGCACCGATAAAGAACCTAGTATGCGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATCCGCGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGTTCCTCTTACAATTGGAACCAGCATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGAAAAAATAAAGGCAAATGAGAGGTTTGCAGTATACATAGTTATTCCAATGTGGCCGGAGGGTGTTCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTCGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGAAATCGAGAAGCCATAGACATTCATGAAAATATTACTGTATCTGGAACTCCTCCCCCACCAAATACTCCACAAGCAAATAGTCGAAATAACCGGCGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGACGAATATGTGATATTGGGGTCAGCAAACATCAATCAGCGCTCTATGGAAGGAACTAGGGACACTGAAATTGCAATGGGAGCCTACCAACCTGAATATACATGGGCAAGAAAACAGTCTTATCCACGCGGACAGGTTCATGGATACAGGATGTCTCTTTGGGCAGAACATACGGGGACAATCGAAGACTGTTTCTTACAACCAGAGAGTTTGGAATGTGTGAGAAGGGTTCGAACAATGTCCGAAATGAACTGGAAACAATTTTCATCAAACGACTTGACAGAGATGAGAGGGCATTTACTAAAGTACCCTGTTGAAGTTGATAGAAAGGGTAAGGTTAGACCTCTTCCTGGTCAAGAAGAGTTTCCTGATGTTGGAGGGAAGATAGTAGGATCATTTATTGCCATTCAAGAAAATCTAACCATTTGA 3153 0.4082 MDNHGSSPPPYGYPNPYGYPPYPYPPPPPPPNQSQGPSDQYPYPYPPTSTNPYSYESTYPPNPSHSTNYSYSYPPPPPPPPNPLEYQTHQPSNVYPYPYPYPQHYQYPPISDDSNSPHASAYPPLNDLMSNVQISDNTPSAPPVRAPPARVMALSPIITHSYSALNEEKKEEFYGHTSNNSFSGFEHSYSSLGDSPNLSGYSGGSFDDLVHNQSLQIVPVQSKGSLRVLLLHGNLDIWVHGAKNLPNMDMFHKTLGDMFGKFPGNVSNKIEGSMSRKITSDPYVTISLSNAVVGRTFVISNSENPVWEQHFHVPVAHHAAEVHFVVKDSDVVGSQLIGVVAIPVEQLYSGEKVQGTYPILNSNGKPCKQGAVLSVSIQFIPIENLIMYHQGVGAGPDYFGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVILDHGMYYAHGQCWRDIFEAIRQAKRLVYITGWAVWHKVRLIRDATSRSHASEYTLGDLLRSKSQEGVRVLLLVWDDPTSRNILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRMAGKRHSWAKQQEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLKTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPTGIKKLKSLYDDALLKIERIPDILRISDIPSIGDDNPASWHAQIFRSIDSNSVKGFPKEPKDAPIKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAIDIHENITVSGTPPPPNTPQANSRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARKQSYPRGQVHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMSEMNWKQFSSNDLTEMRGHLLKYPVEVDRKGKVRPLPGQEEFPDVGGKIVGSFIAIQENLTI 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01313 1050 Gene3D C2 domain 228 374 IPR035892 -
Trre16g01313 1050 FunFam Phospholipase D 709 942 - -
Trre16g01313 1050 ProSiteProfiles C2 domain profile. 222 357 IPR000008 -
Trre16g01313 1050 SUPERFAMILY Phospholipase D/nuclease 716 982 - -
Trre16g01313 1050 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 561 596 IPR001736 GO:0003824
Trre16g01313 1050 SMART pld_4 561 596 IPR001736 GO:0003824
Trre16g01313 1050 SMART pld_4 896 923 IPR001736 GO:0003824
Trre16g01313 1050 FunFam Phospholipase D delta 228 375 - -
Trre16g01313 1050 SUPERFAMILY Phospholipase D/nuclease 443 660 - -
Trre16g01313 1050 MobiDBLite consensus disorder prediction 70 86 - -
Trre16g01313 1050 Pfam C2 domain 233 359 IPR000008 -
Trre16g01313 1050 CDD C2_plant_PLD 228 380 - -
Trre16g01313 1050 MobiDBLite consensus disorder prediction 21 93 - -
Trre16g01313 1050 FunFam Phospholipase D delta 434 675 - -
Trre16g01313 1050 Pfam Phospholipase D C terminal 970 1040 IPR024632 -
Trre16g01313 1050 MobiDBLite consensus disorder prediction 50 69 - -
Trre16g01313 1050 MobiDBLite consensus disorder prediction 21 49 - -
Trre16g01313 1050 Pfam Phospholipase D Active site motif 897 923 IPR001736 GO:0003824
Trre16g01313 1050 Pfam Phospholipase D Active site motif 562 596 IPR001736 GO:0003824
Trre16g01313 1050 Gene3D Endonuclease Chain A 719 954 - -
Trre16g01313 1050 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 896 923 IPR001736 GO:0003824
Trre16g01313 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 231 382 IPR035892 -
Trre16g01313 1050 Gene3D Endonuclease Chain A 434 675 - -
Trre16g01313 1050 PANTHER PHOSPHOLIPASE D 225 1040 IPR015679 -
Trre16g01313 1050 SMART C2_3c 234 356 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01313 Trre-Chr16 10211511 10218716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01313 14 1050 Phospholipase D Gene Family (Wang group) AT2G42010 68.015 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01313 K01115 - gmx:100805294 1582