Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01311 ATGTCCGAAGAAGGTTCTAGAAACATTGATCTAACTCTCGGTGATCCCAAAGAGGAACCGGAAACAGAAGATGGATCAGCAATAAAAGTGATGCCGGTGGCGATGCACGTTCCCATGCAAATGAACCAAGCCCAAGCCCAGGCTCAGGCCCAACAACAACCGCATCAAAAGAGAGCCTCTACAAAAGACCGTCACACCAAAGTAGAAGGAAGAGGCAGAAGAATCCGAATGCCTGCCACGTGTGCGGCAAGGATCTTCCAACTAACCCGAGAACTCGGTCATAAATCCGACGGTGAAACAATCCGGTGGCTACTTGAACACGCGGAACCCGCCATCATTGCCGCCACCGGAACCGGCACCGTCCCCGCCATCGCCATGTCTGTTAACGGCACTCTCAAAATTCCAACCACCTCCCCAAATAAGGATCATGAACCACAACAATCCGAAGACTCGCCGGAGAAAAAGAAACGTAAAAGACCATCGAACAGTGCTTACGTGGACATAAACGACAGCGTTTCAGTTTCAGCAGGTTTAATAACAACCTCGAACATAAACCAGAATCTAACAGCCACCACGATAATTCCGCAACAAACTGCAACTCCGTTACCGCAAAATATGGTTCCTGTGTGGGCCATACCATCAAACGCAGTCGTTTCAGGTGGAAACGCGTTTTTCATGGTTCCAACGAATCAGCCTCAGTTTTTCACATTAGCTAGACCAATAACCGGTTTCGTTTCTTCAATGGTAACACCGGTTATTCAACTCCAACAACAAGCCTCCACGTCATCCAACACGTGTACAACATCTCCGGTAGTGAAGTCTCCGGCGAGAGCCACGGTGATGGCGCCGAGTACCGCCGCAACAACCACCACGCAGATGCTTAGGGATTTTTCGTTGGAGATTTATGATAGACAAGAGCTTCAGCTATTGAGAGAACGTAATTGA 945 0.4889 MSEEGSRNIDLTLGDPKEEPETEDGSAIKVMPVAMHVPMQMNQAQAQAQAQQQPHQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPNKDHEPQQSEDSPEKKKRKRPSNSAYVDINDSVSVSAGLITTSNINQNLTATTIIPQQTATPLPQNMVPVWAIPSNAVVSGGNAFFMVPTNQPQFFTLARPITGFVSSMVTPVIQLQQQASTSSNTCTTSPVVKSPARATVMAPSTAATTTTQMLRDFSLEIYDRQELQLLRERN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01311 314 MobiDBLite consensus disorder prediction 41 56 - -
Trre16g01311 314 MobiDBLite consensus disorder prediction 1 26 - -
Trre16g01311 314 MobiDBLite consensus disorder prediction 57 71 - -
Trre16g01311 314 MobiDBLite consensus disorder prediction 41 71 - -
Trre16g01311 314 Pfam TCP family transcription factor 60 159 IPR017887 -
Trre16g01311 314 MobiDBLite consensus disorder prediction 132 165 - -
Trre16g01311 314 MobiDBLite consensus disorder prediction 143 163 - -
Trre16g01311 314 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Trre16g01311 314 MobiDBLite consensus disorder prediction 1 25 - -
Trre16g01311 314 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 302 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01311 Trre-Chr16 10203830 10204774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01311 54 308 TCP Transcription Factor Family AT2G45680 56.747 5.73e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre16g01311 TCP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01311 - - cam:101488699 491.886