Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01306 ATGACTAGAAAAAAGGTGAAACTTGCTTTCATTTCAAATGATGTTGCAAGGAAAGTATCATATAAGAAAAGACAAAAGAGTCTATTGAAAAAGGTTGATGAATTAAGCACCCTTTGTGGAATTGATGCATGTGCTATAATTTATGGCCCTTATGGTCCTCAACCTGAGATTTGGCCATCACCATTGGGAGTTCAAAGGGTTCTCTCAAAATTCAGGACAATACCTGAATTTGATAAGAGCAAAAAAATGTTGAATCAAGAGACATTCATGAAACAAAGGATTTTGAAGGCTGAAGAGCAGGTGAAGAAGCAAATGAAAGATAATAGGGAGAAAGAGATGACACTTCTAATGTTTCAATGTCTCAATTTAGGTGATATTGTCCACAACAATATGTCAATGACTGATTTGAATCATCTTGATTGGTTGATCGATCAAAATTTGAAGGATATTGACAAAAGGTTGGACGTAGAAGATAATAATTGTAATAACAGTCAAAGTCAAATCATGACTACTCAAAACCAAGTTCCTGTCCAAATGGCACAACCACCGCCGCCGCCACCACCACCAGCACCTTGGAAGGAAGAAATGGCAATGATGATGGGTCATAGTGGGATGACGGTAAATAATGCTGACATCATGCAAAGGAATTTCTTGATGGATTTGACGGTGAATGGTGGGGATGAGACAATTCCATTCGGTCATCCTCATGATGCAGATCTTAATAGTGGATTTCGGCCTAATCTACAACCTTAA 753 0.3798 MTRKKVKLAFISNDVARKVSYKKRQKSLLKKVDELSTLCGIDACAIIYGPYGPQPEIWPSPLGVQRVLSKFRTIPEFDKSKKMLNQETFMKQRILKAEEQVKKQMKDNREKEMTLLMFQCLNLGDIVHNNMSMTDLNHLDWLIDQNLKDIDKRLDVEDNNCNNSQSQIMTTQNQVPVQMAQPPPPPPPPAPWKEEMAMMMGHSGMTVNNADIMQRNFLMDLTVNGGDETIPFGHPHDADLNSGFRPNLQP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01306 250 PANTHER MADS BOX PROTEIN 3 153 - -
Trre16g01306 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01306 250 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre16g01306 250 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre16g01306 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre16g01306 250 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre16g01306 250 Coils Coil 94 114 - -
Trre16g01306 250 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g01306 250 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Trre16g01306 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01306 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01306 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01306 Trre-Chr16 10178115 10178867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01306 1 160 Type I MADS-box Gene Family AT5G48670 58.750 5.54e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g01306 SRF-TF 4e-15 No_clan