Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01301 ATGGGTAATCAATATCGCTCAGGAAACTGGTTGAATGAAGACAACAACTCAGTTCGTGATGTCAGAGCTCTAAGATATCTATTGGCTAATAATTCTGCAAATAATTCTTCTTTTGTTGGTATCAATAATCACAATATTGTAAGAGGATCAAGAACCATAAGAGTTCAATCAATTCATGAACTTATCAATCTTCCCCAACTTCCTGGAAACACAAACACTACTGGTCATGATGGTGGTGTTGATGCTCCTACTATATTACCAAGTAGTACTACTATTAACAATTATAATGATAACCGTGCTTCTTCTTCTTCTGCCAGACCTTTTGGATCAACTTTGACCGTTATCAATAGAAATAACAGCATATCATCATCATTAGGTTTATCATCCATGTTATATCCAAATATTGGAGGACAACCTGCAAGACCTGCTGCTCTATATAATAACAGTCGAAGTGGTGGAGCTGCAGGAAACAATAGCAATATTAGTAATCCTATTTTGAATAATGGTAGAATTAACAATAATGTTGCCACTACTACTGCTGGTCCTATTAGGAATGATGACCTTGGGCGCTCTTTGTCCTTAAAGAGAAGTAGATCACCTGATCAATTCTTGAGAGGCGATAGTTCTGGTCAAGGTTTAAAAGATGCTGGAACCTCTAGCAGAAGACGGATAATTCCTCCTATTTGTCTTCATCAAGATAATCACAACATGTCTTCTTCAACTTCATCAACATCGCAGAGGCACTATAGCGGTAATAGTGTCATTTCTAATATGTTGAACCAAAACATGGTGAACCAAGCTATTGCTGATGGTGCAGGACCAAGTAGTACTAGCATGACTCAGTCTCACATTAATAGTCTTCTAGAAAGTCATGGCCAAGCAGGTATTGCTGGTAACCTACCATATCAGTCTAATTCTACTAATGAGCCAATGGATATTAATCGTTTTTTGTTCCCACCTCGACAAGACCATCCTCTGAATAACTTCATCAATAGAAGATATGACCCTTCAGCTGCCTTTGCATCAACAAGAGGATCATTGGTAACAACTCAAGCTGCCACACCCTTTCAAATATACAACAATTTTATGCCTCTTACAATTGCTGGTAGTGGTTCTTCTTTTCGAAGCACGGGTTCAAGACAAAATCATAGTAATAATAACAACTTTGATTTCTTTGAAAGTTTTCATCGCGAAATTGATGATGTATTTGGTCATAGTACAATAAGTATTCAAGAACATGCAAGGGTATTGCCAATTGGTCGTGTGTATCGGTCTTTAGTTCAAACTTTTGTTCTTGTGCAGCCTAGTAGTTCTGTACCATCGCAACCACCATTGTTGATTTCTGATCCTTCAATGAGCAATTACCGGCTAAACCCTCCTCCTGGACAAGGGTTTAGTACTACTTTAGAAGCTAATCGATATGTACAGACCAATTCGACATTAACATCGACAAGATCAGAGAATCGAGTTCGTCTTGGCGGTCATAACCACATTTTTGCTTCAAATTTTCCTGAACTTATGGCAGAGCCAGAGAGGAACAGACGCAGGGGTGAGATCCTCACATTCATCCAACAAGAAACGTTTCAAACAAGTCATGAAGAGACCAACACAGAGAATCAAATCTGCACCATATGTCAGGAAGATTATGTGGATGGACAACGAATAGGAAGAATAAACTGTAGGCACATATATCACCTTGACTGTATCAAACAATGGTTGATGCATAAGAATATATGTCCAATATGTCAGAATAAAGCTCTGGAGATTGGTCATGGAGATGAGGATGATAATCAAGGATAA 1800 0.3833 MGNQYRSGNWLNEDNNSVRDVRALRYLLANNSANNSSFVGINNHNIVRGSRTIRVQSIHELINLPQLPGNTNTTGHDGGVDAPTILPSSTTINNYNDNRASSSSARPFGSTLTVINRNNSISSSLGLSSMLYPNIGGQPARPAALYNNSRSGGAAGNNSNISNPILNNGRINNNVATTTAGPIRNDDLGRSLSLKRSRSPDQFLRGDSSGQGLKDAGTSSRRRIIPPICLHQDNHNMSSSTSSTSQRHYSGNSVISNMLNQNMVNQAIADGAGPSSTSMTQSHINSLLESHGQAGIAGNLPYQSNSTNEPMDINRFLFPPRQDHPLNNFINRRYDPSAAFASTRGSLVTTQAATPFQIYNNFMPLTIAGSGSSFRSTGSRQNHSNNNNFDFFESFHREIDDVFGHSTISIQEHARVLPIGRVYRSLVQTFVLVQPSSSVPSQPPLLISDPSMSNYRLNPPPGQGFSTTLEANRYVQTNSTLTSTRSENRVRLGGHNHIFASNFPELMAEPERNRRRGEILTFIQQETFQTSHEETNTENQICTICQEDYVDGQRIGRINCRHIYHLDCIKQWLMHKNICPICQNKALEIGHGDEDDNQG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01301 599 ProSiteProfiles Zinc finger RING-type profile. 542 583 IPR001841 -
Trre16g01301 599 MobiDBLite consensus disorder prediction 177 220 - -
Trre16g01301 599 SMART ring_2 542 582 IPR001841 -
Trre16g01301 599 MobiDBLite consensus disorder prediction 69 108 - -
Trre16g01301 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 587 IPR013083 -
Trre16g01301 599 SUPERFAMILY RING/U-box 522 586 - -
Trre16g01301 599 MobiDBLite consensus disorder prediction 195 216 - -
Trre16g01301 599 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 587 IPR045191 GO:0061630
Trre16g01301 599 Pfam Ring finger domain 541 583 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01301 Trre-Chr16 10141201 10144790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01301 502 588 C3H Transcription Factor Family AT2G15530 37.374 1.78e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01301 - - tpra:123896003 565.074