Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01299 ATGGCTTTGAAAGTGGCAAGTGGAAGTAGTAAAAGTAAAACAGAAAGAAACATTCCAACCACATGCATTTATTGGCTTGCTGGAAGATGTAACAGAAATCCTTGTAGATTTCTGCACAGCCAAACACCATCATCTTGTAATGCCGCGGCCAACGCTGGATATAATTCAAGAAAGCGTCATTCCTCGTCTTATGGGGTTTTGCATAATGAAACATCTTATAATGCAAAGAAGCAACATTCATCTTATGTTTATCAGAAGTCCTTTCCCAAACATAATGCTAAGACGGTCGTGAATAAAATGATCGGAGATGACAAAGACAGGACACAACTCGTTACTGAGACGAATAAGACTATTGATGACAGAGACAATGCACAAGTTGCTGAGGTTTCTCAAAATCCTTCACCAAGTATCTGCAAATATTGGGTGAATGACAGCTGTGTTCATGGTGATCAGTGCCGAAATTTACATTCGTGGTTTTACGGTGATGGGTTTGCAACAATAGCAAAGCTTCAAGGACACAAGAAGCTTATCACTGGAATGGCAATTCCTAAAGGATCAGACAAACTTTATACCGGCAGCACTGATGGGACAGTTCGGACATGGGACTGCCAGACTGGGAAATGTGTTAATGTGGCAAATCTTGGCAGTGAAGTTACCTCTTTGATCAGCGAGGGCCCGTGGATTTTTGTTGGTCTGCTAAACACTGTCATGGCATATAATATTCAGACTGCTTCACAGTATACTCTTGATGGACCTAACGGGCAAGTCCGTGCCATGACTGTTGGCAATGATACACTTTTAGCTGGAGCAGAGAATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGAAGCCGATTCACCTTTTAAACTTGTTGCATCACTGCAAGGCCACACTAAATCTGTTGTTTGCCTTACCATTGGAACGCTCACGAAGCTGTATTCGGGATCCGAGGACCAAAGCATTAAGGTTTGGGACCTTAACACATTTGAGTGTAAGATGACACTCAATGCACATATAGATACAGTCACATCTCTAATTTGTTGGAAAAGCTTCTTGTTATCCGGTTCATCTGATTGTACCATTAAGGCCTGGTTCCAAACTGAAGAGGGGAATTTGGAAGTGATACATTCACACAATGTGGAAAATGGTGTTGTTGCACTTTCTGGCATGGCCGATCCAGATAGTAAGCCTATATTATTATGTTCTACCAGAGACAATTCGGTTCACCTCTATGAACTGCCATCATTTGTCGAGAGGGGTAGATTGTTTGCAAAGCAAGAAATTGGATTAGTTGATGCAGCTGCCGGTGGACTCTTTTTCTCTGGAGACAGAACTGGATTGCTGACAGTTTGGAAATGGTTGGGAGAGTACAAGGATGTAGATCCTCTCGAGTCATGA 1398 0.4242 MALKVASGSSKSKTERNIPTTCIYWLAGRCNRNPCRFLHSQTPSSCNAAANAGYNSRKRHSSSYGVLHNETSYNAKKQHSSYVYQKSFPKHNAKTVVNKMIGDDKDRTQLVTETNKTIDDRDNAQVAEVSQNPSPSICKYWVNDSCVHGDQCRNLHSWFYGDGFATIAKLQGHKKLITGMAIPKGSDKLYTGSTDGTVRTWDCQTGKCVNVANLGSEVTSLISEGPWIFVGLLNTVMAYNIQTASQYTLDGPNGQVRAMTVGNDTLLAGAENGVISAWRGSSEADSPFKLVASLQGHTKSVVCLTIGTLTKLYSGSEDQSIKVWDLNTFECKMTLNAHIDTVTSLICWKSFLLSGSSDCTIKAWFQTEEGNLEVIHSHNVENGVVALSGMADPDSKPILLCSTRDNSVHLYELPSFVERGRLFAKQEIGLVDAAAGGLFFSGDRTGLLTVWKWLGEYKDVDPLES 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01299 465 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Trre16g01299 465 SMART c3hfinal6 16 41 IPR000571 GO:0046872
Trre16g01299 465 ProSiteProfiles Zinc finger C3H1-type profile. 132 159 IPR000571 GO:0046872
Trre16g01299 465 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Trre16g01299 465 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Trre16g01299 465 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Trre16g01299 465 ProSiteProfiles Zinc finger C3H1-type profile. 16 42 IPR000571 GO:0046872
Trre16g01299 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Trre16g01299 465 SMART WD40_4 242 279 IPR001680 GO:0005515
Trre16g01299 465 SMART WD40_4 163 202 IPR001680 GO:0005515
Trre16g01299 465 SMART WD40_4 328 365 IPR001680 GO:0005515
Trre16g01299 465 SMART WD40_4 287 325 IPR001680 GO:0005515
Trre16g01299 465 SMART WD40_4 371 412 IPR001680 GO:0005515
Trre16g01299 465 Gene3D - 286 465 IPR015943 GO:0005515
Trre16g01299 465 Gene3D - 143 285 IPR015943 GO:0005515
Trre16g01299 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 202 - -
Trre16g01299 465 Pfam WD domain, G-beta repeat 289 325 IPR001680 GO:0005515
Trre16g01299 465 Pfam WD domain, G-beta repeat 167 202 IPR001680 GO:0005515
Trre16g01299 465 Pfam WD domain, G-beta repeat 330 364 IPR001680 GO:0005515
Trre16g01299 465 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Trre16g01299 465 PANTHER - 12 458 IPR044715 -
Trre16g01299 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 328 - -
Trre16g01299 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 334 IPR001680 GO:0005515
Trre16g01299 465 SUPERFAMILY WD40 repeat-like 141 452 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01299 Trre-Chr16 10137062 10139189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01299 109 329 Eukaryotic Initiation Factors Gene Family AT2G46290 22.131 2.23e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g01299 WD40 0.00024 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01299 - - mtr:25500966 569.696