Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01295 ATGGCTTTTAATAAATTATTCAATTCCATCTTTTGGTGCTTTATTTTACTTCTTGTTATTGTCACGTTTTTCACTACAAATGTTAGTTCTACCAAGCAATCTAAGATAGAAGGCATGCAAATGAATGTGATTGATCAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCGACAACAACTTGCCGTTTGCTCAGTAGGCTATGCAGGAAAAATGGCAAACAACATTGGTAAAGACCTAATCCATTATATAGTTACCGATCCTAGTGACCACCCTTTAAACCCAAGACCCGGAACCTTAAGATATGGAGCATCTAGAATTCAAGGTAAGGTTTGGATCACATTTCAAAAGGATATGAACATTAAGCTCGTGAAACCTCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGGGGTGTCAATGTCCACATTGCTGACAATGCGTGCTTGATGATATATAAGGCAACAAACATAATCATCCATGGGATTAGGGTTCATCATTGTCGACCTCAAGCTCCGGGAATGGTGATGGGTCCCAATGGAAATATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCAGCTTCAAAGATTTGGATTGATCATAACACTCTTTATGATTGCCAAGATGGTCTTCTAGACGTTACACGAGGTTCCACTGATATTACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAAGTTATGCTTCTTGGACATGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACTGTTGTATACAATTATTTTGGACCTAATTGCCAACAATGCATGCCTAGAATTCGTCATGGATATGCACATGTTGCGAATAATTTGTACATGGGGTGGGTGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGCCAATCAAATCTCTTTATAGCACCAACAAAAGGGAGTAAGGAGGTGACATGGAGAAAAAGTAATAATGGATTCGGAGACATGTGGGAATTTTATTCAGTTGGGGACGCTTTTGAAAATGGAGCATCCTTCATGGAAACAAAAGATGGACAAGTGAAAAAACCAAACTATAGCCTTGAACAAAATTTTAAAGTTGTTGATGCCAAATATGTAAGGTCATTGACAAGATCATCTGGTGCGTTACAATGCAGTAAAACCACAATATGTTGA 1179 0.3817 MAFNKLFNSIFWCFILLLVIVTFFTTNVSSTKQSKIEGMQMNVIDQCWRLNPEWRKHRQQLAVCSVGYAGKMANNIGKDLIHYIVTDPSDHPLNPRPGTLRYGASRIQGKVWITFQKDMNIKLVKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPNGNIMPLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCQQCMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPTKGSKEVTWRKSNNGFGDMWEFYSVGDAFENGASFMETKDGQVKKPNYSLEQNFKVVDAKYVRSLTRSSGALQCSKTTIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Trre16g01295 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Trre16g01295 392 Pfam Pectate lyase 129 309 IPR002022 -
Trre16g01295 392 SMART amb_all 118 315 IPR002022 -
Trre16g01295 392 PANTHER PECTATE LYASE 18-RELATED 34 388 IPR045032 GO:0030570
Trre16g01295 392 SUPERFAMILY Pectin lyase-like 36 386 IPR011050 -
Trre16g01295 392 Gene3D - 41 385 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01295 Trre-Chr16 10122763 10124457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01295 72 319 Polysaccharide Lyase AT5G09280 68.952 4.04e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01295 K01728 - gmx:100811216 676.011