Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01292 ATGGAGTTTGACAAGCCCCAATACGCGCAACTGAGGAAATACACCGGTCCAGTAGCCAGTGTCAAAGTGCTGGTTGTGGATGCTAACTCAGCATGCCGAGCAGTTATATCAAAATCGCTTCTTTCACTTGGATATGAGGTTGCAACTGCTACACTAGCTTCCGAGGCTTTATCCGTTATTGGGGAGAAGAAGAACGAGATAAACATTGTGCTTGTGGAGGCTCAGTTGCCTGACATGGAAGTATATGAGCTAATAGATAAAATGAAAAGCTCCAGTATTCCATCTTTCATTACAACTGCTTATGATGATGACATTCCATCTATAACAAAAGCACTACAGACAGGAGCTAAATGGTGTTTCAGAAAACCGGTACAGATTTCTGATCTACAACAGCTGTGGCGATTCGCAGTATGGAACCGGTATGAACCAACATTAAGCGAAGAAGTGTTTGATTATTGGTGGCCTCTGTCTGAAGTGGTTACGAATGGTCTAGAATGCCAACCATCCTTGAATACCGGAGAACAGTCTGTCGAAAGTGTAAATGGTAAAGCACAAGAATCTTTTGATAAAGAGACTACAGTACTCCTGAAAACGAAAAGGCGTACCTGGACTGATGATATAAATAGGAAGTTCTTGGATGCTGTTCAAACAGCAGGAATAGACGCTCGGCTTGAGACAATATTCGAGCTTATGGATGTGGAAGGACTTAAAAAAGACCATGTTTCAAAGTATTTACAGGAATATCGTCAATCTATGAATCTACATGCTAATCCAATGGAACAGCATGTGAATGGACAAGGTGTTACCAAAAATCCAGCTTTCAATCAGAAGGATCTTAACATGTCCGATCAATTTTTTCCTGCACTTCCTATTTCTCGACTACCTCCAGAGGAAAATGAAAAGATCGATGAAGTTTTTAATGCAAAAGAAAGTCAGATGTTTACCGACGATGATTTGAAAATGTGGTTGTCGACAATTCCAGACAAGAAGACAACAAGAAATTTAGTTGGTATCTCTCGGTTATTTAATATGTTGCTTGAAGCTGTGGAAGGATAA 1056 0.4034 MEFDKPQYAQLRKYTGPVASVKVLVVDANSACRAVISKSLLSLGYEVATATLASEALSVIGEKKNEINIVLVEAQLPDMEVYELIDKMKSSSIPSFITTAYDDDIPSITKALQTGAKWCFRKPVQISDLQQLWRFAVWNRYEPTLSEEVFDYWWPLSEVVTNGLECQPSLNTGEQSVESVNGKAQESFDKETTVLLKTKRRTWTDDINRKFLDAVQTAGIDARLETIFELMDVEGLKKDHVSKYLQEYRQSMNLHANPMEQHVNGQGVTKNPAFNQKDLNMSDQFFPALPISRLPPEENEKIDEVFNAKESQMFTDDDLKMWLSTIPDKKTTRNLVGISRLFNMLLEAVEG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01292 351 Gene3D - 198 253 - -
Trre16g01292 351 Gene3D - 19 147 - -
Trre16g01292 351 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Trre16g01292 351 SUPERFAMILY CheY-like 21 138 IPR011006 -
Trre16g01292 351 SMART REC_2 21 133 IPR001789 GO:0000160
Trre16g01292 351 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 269 IPR045279 GO:0009736
Trre16g01292 351 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 250 IPR006447 GO:0003677
Trre16g01292 351 SUPERFAMILY Homeodomain-like 196 252 IPR009057 -
Trre16g01292 351 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01292 Trre-Chr16 10115810 10117877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01292 17 249 Response Regulator Gene Family AT2G25180 25.806 3.30e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g01292 Response_reg 9.6e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01292 - K14491 tpra:123900016 462.611