Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01291 ATGTCTACTTCATCTCTCAAGTATCAAATCAACATCCCTGCACAAGTTGTGAATTCTACACTAACTTCCAATGCATTATCCGTTATTGGGGAGAAGAAGAACGAGATAAACATTGTGCTTGTGGAGGCTCAGTTGCCAGACATGGAAATATACGAGCTCATAGATAAAATGAAAAGCTCTAGTATTCCATCTTTCATTACGACTGCTTATGATGATGACATTCCATCCATAACAAAAGCACTACATACAGGAGCTAAATGGTGTTTTAGAAAACCGGTTCAGATTTCTGATCTACAGCAGCTGTGGCGATTCGCAGTGTGGAACCGGTTTGAACCAATGTTCAGCGAAGAAATATTTGACTAA 363 0.3939 MSTSSLKYQINIPAQVVNSTLTSNALSVIGEKKNEINIVLVEAQLPDMEIYELIDKMKSSSIPSFITTAYDDDIPSITKALHTGAKWCFRKPVQISDLQQLWRFAVWNRFEPMFSEEIFD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01291 120 Gene3D - 6 111 - -
Trre16g01291 120 SUPERFAMILY CheY-like 27 106 IPR011006 -
Trre16g01291 120 ProSiteProfiles Response regulatory domain profile. 1 106 IPR001789 GO:0000160
Trre16g01291 120 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 105 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01291 Trre-Chr16 10112967 10113438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01291 15 111 Response Regulator Gene Family AT2G25180 26.531 4.30e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g01291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01291 K14492 - tpra:123900016 172.94