Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01288 ATGCTAGCCAACACCTTGCAGGATCGGATTAGATTGATTGTGACCACTCTTAAGGGTATGTCTACTTCATCTCTCAAGTATCAAATCAACATCCCTGCACAAGTTGTGAATGCTACACTAGCTTCCGAGGCTTTATCCGTTATTGGGGAGAAGAAGAACGAGATAAACATTGTGCTTGTGGAGGCTCAGTTCCCAGACATGGAAATATACGAGCTCATAGATAAAATGAAAAGCTCTAACTTTCCATCCATAACAAAAGCACTACATACAGGAGCTAAATGGTGTTTTAGAAAACCGGTTCAGATTTCTGATCTACGGCAGCTATGGCGATTCGCAGTGTGGAACCGGTTTGAACCAACATTCAGCGAAGAAATATTTGACTAA 384 0.4167 MLANTLQDRIRLIVTTLKGMSTSSLKYQINIPAQVVNATLASEALSVIGEKKNEINIVLVEAQFPDMEIYELIDKMKSSNFPSITKALHTGAKWCFRKPVQISDLRQLWRFAVWNRFEPTFSEEIFD 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01288 127 SUPERFAMILY CheY-like 34 113 IPR011006 -
Trre16g01288 127 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 112 IPR045279 GO:0009736
Trre16g01288 127 Gene3D - 7 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01288 Trre-Chr16 10087929 10088416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01288 34 118 Response Regulator Gene Family AT2G25180 25.773 4.15e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01288 K14492 - tpra:123900016 149.058