Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01284 ATGGGTGCAGGTGGCAATTTGGTTAGTACAATTATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTAATAAGATCACGTACTATATATGAGATAGAATCAAGACCAGATATTGAACGGCCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTAAATTTCAATCAAGAGGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAGATTATAAAGAAAAAGAAGTATTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATACGTGGCTGAGAAAACAATCTACATGTCCTGTATGTCGTTTGACATTGCACAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAATACAATCTCTCAATGAGTCTAATACTCCACAAGGGAACAATGGTAATGAGACACAAGTTGAAGATAATGCAATAGAAACAGAATCAGGGTTAGAGAGGTTATAA 555 0.364 MGAGGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVIRSRTIYEIESRPDIERPEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDTWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIIQSLNESNTPQGNNGNETQVEDNAIETESGLERL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01284 184 CDD RING-H2_EL5-like 88 131 - -
Trre16g01284 184 Pfam Ring finger domain 88 131 IPR001841 -
Trre16g01284 184 SUPERFAMILY RING/U-box 88 137 - -
Trre16g01284 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 137 IPR013083 -
Trre16g01284 184 PANTHER OS11G0150450 PROTEIN 2 169 - -
Trre16g01284 184 MobiDBLite consensus disorder prediction 155 184 - -
Trre16g01284 184 MobiDBLite consensus disorder prediction 155 175 - -
Trre16g01284 184 SMART ring_2 89 130 IPR001841 -
Trre16g01284 184 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01284 Trre-Chr16 10072978 10074882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01284 78 134 C3H Transcription Factor Family AT4G10160 54.386 3.00e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01284 - - tpra:123899950 355.14