Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01283 ATGATGGGTGCAGGTGGCAATTTGGTTAGTACAATTATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTAATAAGATCACGTACTATATATGAGATAGAATCAAGACCAGATATTGAACGGCCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTAAATTTCAATCAAGAGGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAGATTATAAAGAAAAAGAAGTATTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATACGTGGCTGAGAAAACAATCTACATGTCCTGTATGTCGTTTGACATTGCACAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAATACAATCTCTCAATGAGTCTAATACTCCACAAGGGAACAATGGTAATGAGACACAAGTTGAAGATAATGCAATAGAAACAGAATCAGGGTTAGAGAGGTTATAA 558 0.3638 MMGAGGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVIRSRTIYEIESRPDIERPEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDTWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIIQSLNESNTPQGNNGNETQVEDNAIETESGLERL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01283 185 PANTHER OS11G0150450 PROTEIN 1 170 - -
Trre16g01283 185 MobiDBLite consensus disorder prediction 156 176 - -
Trre16g01283 185 SUPERFAMILY RING/U-box 89 138 - -
Trre16g01283 185 SMART ring_2 90 131 IPR001841 -
Trre16g01283 185 Pfam Ring finger domain 89 132 IPR001841 -
Trre16g01283 185 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre16g01283 185 CDD RING-H2_EL5-like 89 132 - -
Trre16g01283 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 138 IPR013083 -
Trre16g01283 185 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01283 Trre-Chr16 10072975 10074882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01283 79 135 C3H Transcription Factor Family AT4G10160 54.386 3.21e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01283 - - tpra:123899950 357.066