Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01277 ATGTTTCAACATATGAACCATGATGATTTCGCAAATGTGGCAGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGACGACTTGATCAGACTGAATTTGGTAGAAAGGGTCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATTTCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACAAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCTATTAGAGATGACGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGGAGATATGGTCGTGGGAGATCCCCAAGTCCTTATCGTAGAGGCAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGTCCCAAGTATGAACGAGCTGAAAGCCCAGTTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTAGATCAAGTCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCGCGGTCACGGTCACGATCCTAA 807 0.4511 MFQHMNHDDFANVAGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPVNGRYDSRSPPPRRSSPASRPEPRGSPKYERAESPMNGRYDSRSPPPRDRSRSRSRS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01277 268 SMART rrm1_1 76 142 IPR000504 GO:0003723
Trre16g01277 268 Gene3D - 65 195 IPR012677 -
Trre16g01277 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 53 IPR000504 GO:0003723
Trre16g01277 268 MobiDBLite consensus disorder prediction 150 268 - -
Trre16g01277 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 146 IPR000504 GO:0003723
Trre16g01277 268 MobiDBLite consensus disorder prediction 150 167 - -
Trre16g01277 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 139 IPR000504 GO:0003723
Trre16g01277 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 42 IPR000504 GO:0003723
Trre16g01277 268 MobiDBLite consensus disorder prediction 50 73 - -
Trre16g01277 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 16 90 - -
Trre16g01277 268 MobiDBLite consensus disorder prediction 235 268 - -
Trre16g01277 268 MobiDBLite consensus disorder prediction 50 65 - -
Trre16g01277 268 FunFam Serine/arginine-rich splicing factor RS31 67 157 - -
Trre16g01277 268 SUPERFAMILY RNA-binding domain, RBD 14 148 IPR035979 GO:0003676
Trre16g01277 268 Gene3D - 3 64 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01277 Trre-Chr16 10040484 10042119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01277 15 149 Eukaryotic Initiation Factors Gene Family AT1G49760 27.083 2.02e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01277 K12893 - gmx:100797778 330.872