Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01276 ATGAAGCCCATCTTTTGCGGAAATCTGGATTTCGACGCAAGACAATCTGATGTTGAGAGGCTTTTCAGAAAATACGGGAAGATTGATAGAGTGGACTTGAAGTCTGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGACGACTTGATCAGACTGAATTTGGTAGAAAGGGTCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATTTCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACAAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCTATTAGAGATGACGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGGAGATATGGTCGTGGGAGATCCCCAAGTCCTTATCGTAGAGGCAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGTCCCAAGTATGAACGAGCTGAAAGCCCAGTTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTAGATCAAGTCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCGCGGTCACGGTCACGATCCTAA 870 0.4517 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPVNGRYDSRSPPPRRSSPASRPEPRGSPKYERAESPMNGRYDSRSPPPRDRSRSRSRS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01276 289 MobiDBLite consensus disorder prediction 171 188 - -
Trre16g01276 289 Gene3D - 86 174 IPR012677 -
Trre16g01276 289 MobiDBLite consensus disorder prediction 71 86 - -
Trre16g01276 289 MobiDBLite consensus disorder prediction 171 289 - -
Trre16g01276 289 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Trre16g01276 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Trre16g01276 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Trre16g01276 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Trre16g01276 289 Gene3D - 1 85 IPR012677 -
Trre16g01276 289 MobiDBLite consensus disorder prediction 256 289 - -
Trre16g01276 289 SMART rrm1_1 97 163 IPR000504 GO:0003723
Trre16g01276 289 SMART rrm1_1 3 70 IPR000504 GO:0003723
Trre16g01276 289 MobiDBLite consensus disorder prediction 71 92 - -
Trre16g01276 289 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 280 - -
Trre16g01276 289 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
Trre16g01276 289 SUPERFAMILY RNA-binding domain, RBD 4 166 IPR035979 GO:0003676
Trre16g01276 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01276 Trre-Chr16 10040484 10043857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01276 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 4.78e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01276 K12893 - gmx:100797778 398.667