Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01275 ATGGTGGAAGAAGGTAAAGTTACTGTTGCAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAGCTTGTTCCTATTGCTCTTACAAAAGCAAAAGAGGTAAAAGGGTTTCTTGTTAGATGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGCTATCAGATTTATCTAGCCACCCTTGTTTTTCAAAGAATGCTCTTTGCAAGGAACAATTGCAGGCTGTGTCAAAGACACTAAGAGAAGCTATTGAATTAGCTGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGAAAACTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACGAAAACCGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTTTTTAGCAGAATCAGATATTGAAACACATGGCAATATAAAAGAACTACTTGCGCGTCTTCAAATTGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGATTGCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGCTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTTACAGCAACATCAACAAGGATTAGGGAGAAAACAGTTAGTATTATATGTTCTCTTGTCGAATCGGGTGGTAACTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGGCTTGTTGAATCAGGTAGTACTTTTGTTAAAGAAAAGGCTATTGTTTCTCTTCAGAGGTTGTCGATGTCAGAAGACACAACTCGTGCGATTGTTGGACACGGAGGGGTTCCTCCGTTAACCGAGCTTTGTCAGGTTGGTGATTCTGTTTCACAATCTGCAGCAGCTTGTACTTTGAAGAACATTTCGGCTGTTCCGGAAGTGAGAAATGTTTTATCTGAAGAAGGTGTTGTTAAGGTTATGATCAATCTACTTAGCCATGGAATTTTGTTAGGTACTAAAGAGTATGCTGCTGAGTGTCTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAGAAAATCGGTTATATCAGAAGGCGGCGTTCGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGTGCATTGAGGAATCTCGTTGGATCGGTTCCCGAGGAAACATTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTGTTGAAGTCAGGATCATTAGGCGCGAAACAAGGCGCAGCGTCGGTTATATGCAAAGTTTGCAGCACAATTGAGATGAAGAAAATGATAGGTGAAGTTGGTTGCATACCTCTATTGATCAACATGCTTGAGGCTAAAGCAAATACTGCTAGAGAACTTGCATCACAAGCAATTGCAAGCTTGATGATTCTGTCTGAGAATCGAAGAGAAGTTAAGAAAGACGATAAAAGTGTGCCGAATTTGGTTCAATTGCTTGATCCAAGTCCACAGAATACAGCAAAGAAATATGCAGTTTGTTGTCTTGCATCACTTTCTTCTTGTAAGAAATGTAAGAAGTTGATGATTTCATATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAGATGGAGATTCCAGGAGCTAAAAAGTTGCTTGAGAGATTGGAAAGAGGGAAACTCAGAAGCTTGTTTAGCAGAAAATAG 1686 0.3885 MVEEGKVTVAVDTCSTEEWLLNSQELVPIALTKAKEVKGFLVRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGFLAESDIETHGNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAAFCRSNVAALVQLLTATSTRIREKTVSIICSLVESGGNCENWLVSEGVLPPLIRLVESGSTFVKEKAIVSLQRLSMSEDTTRAIVGHGGVPPLTELCQVGDSVSQSAAACTLKNISAVPEVRNVLSEEGVVKVMINLLSHGILLGTKEYAAECLQNLTASNESLRKSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEETLVSLGLLPCLVHVLKSGSLGAKQGAASVICKVCSTIEMKKMIGEVGCIPLLINMLEAKANTARELASQAIASLMILSENRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLASLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01275 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 391 430 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 185 225 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 309 350 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 351 390 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 268 308 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 472 514 IPR000225 GO:0005515
Trre16g01275 561 SMART arm_5 431 471 IPR000225 GO:0005515
Trre16g01275 561 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Trre16g01275 561 SUPERFAMILY ARM repeat 153 540 IPR016024 -
Trre16g01275 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 559 - -
Trre16g01275 561 Gene3D - 147 334 IPR011989 -
Trre16g01275 561 Gene3D - 335 551 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01275 Trre-Chr16 10027700 10029385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01275 206 480 U-box Gene Family AT3G54790 27.500 4.41e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01275 - - gmx:100798922 874.004