Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01256 ATGAGTTTTGGGGGTTTTGTAGAAAACAATTCAGGTGGTGGTGGTGGTGGAGGTGTGAGAAACATAGGAGAAATTTCTTACAACAACGAAAGAATGCCATTTGGTTCTTTCTCTCAACCTCGTCTTGTTACAACTCCTGCTTTGGCTAAATCTATGTTTAACTCTCCTGGATTATCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATAGATCAATGCATGAGAATTATGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAAGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCACCTAGAAAAAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGATTGGAACTTAGCAAAAGACTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAAAACAATTTGCTTAGGCAAGAGAATGATAAGCTAAGAGCTGAAAATATGTCTATTAGGGATGCAATGAGGAATCCTATATGTTCAAATTGTGGTGGTCCGGCTATGATCGGTGAGATTTCACTTGAGGAACAACATCTTCGAATCGAGAATGCAAGGTTGAAGGATGAGCTAGACAGAGTTTGTGCACTAGCCGGGAAATTTTTAGGCCGTCCGATTTCGTCGTTGCCAAACTCAAGTTTAGAGCTTGGTGTTGGTGGAAATAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCAACATTACCTGATTTTAGTGCTGGAATGTCTAATAATCCTTTGGCCATTGTGTCTCCTTCAACTAGACAAACACCTTTGGTTGGTGGATTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAACTTGCTTTGACTGCTATGGATGAGTTAGTTAAGATGGCACAAACTAGTGAGCCTCTTTGGATAAGGAGTATAGAAGGGGGAAGGGAAATTTTGAACCATGAGGAATATATGAGGACTTTCACTCCTTGCATTGGTTTGAAACCCAATGGTTTTGTCTCCGAGGCATCTAGAGAGACCGGTACGGTCATTATCAATAGCTTGGCCCTTGTCGAGACTCTTATGGACTCTAATCGATGGATGGAAATGTTTCCTTGCATCATTGCAAGAGCTTCCACAAATGAAGTGATATCAAATGGAATAAATGGAACTAGAAATGGTGCACTTCAACTAATGCAAGCTGAACTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAACATGCAGAAGGGGTTTGGGCTGTAGTTGATGTGTCCATAGACACCATCAGAGAAAATTCTGGAGCTACAAGTTTTATGAACTGTAGGAAGCTTCCTTCTGGTTGTGTTGTGCAAGATATGCCTAATGGTTATTCCAAGGTGACATGGGTGGAACATGCAGAGTATGAGGAAAATCAAGTACACCAGCTGTACAGACCATTGTTGAGCTCAGGTATGGGATTTGGTGCGGCACGTTGGGTCGCTACCCTACAACGCCAGTGCGAGTGCCTTGCCATATTAATGTCTTCCGCTGCACCCTCTCGAGACCACTCCGCAATAACAGCGGGTGGAAGGCGAAGCATGCTAAAGCTAGCACAACGAATGACGAACAACTTCTGCGCAGGGGTATGTGCTTCAACGGTCCACAAGTGGAACAAGCTTAGCCCTGGAAATGTGGACGAAGATGTTAGGGTGATGACACGGAAGAGCGTTGATGATCCTGGCGAGCCACCGGGGATTGTGTTGAGCGCAGCCACGTCGGTTTGGCTCCCCGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGCGATGAGAGGCTCCGTAGTGAATGGGATATACTATCTAACGGCGGTCCCATGCAAGAGATGGCTCATATTGCCAAAGGACAAGATCATGGCAACTGTGTTTCTCTTCTTCGTGCTAGTGCGATGAATTCAAACCAGAGTAGCATGTTGATACTACAAGAAACATGCATAGACGAGGCAGGGTCGCTTGTAGTCTATGCGCCAGTCGATATTCCAGCCATGCATGTTGTGATGAACGGCGGTGATTCAGCTTACGTGGCATTACTACCATCTGGGTTTGCCGTCGTCCCCGATGGACCTGGATCTCGTGGCACTGAGAATGGGGACGCCACCGCAAACGGAGGCGAGGCGCGTGTTAGCGGGTCACTTCTAACCGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCAACAGCAAAACTCACCGTTGAGTCAGTTGAAACGGTTAACAATCTCATTTCTTGCACCGTTCAAAAAATCAAAGCAGCACTTCATTGTGAAAGCTAA 2433 0.4418 MSFGGFVENNSGGGGGGGVRNIGEISYNNERMPFGSFSQPRLVTTPALAKSMFNSPGLSLALQTNIDGQEDVNRSMHENYEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVSSTLPDFSAGMSNNPLAIVSPSTRQTPLVGGFDRSVERSMFLELALTAMDELVKMAQTSEPLWIRSIEGGREILNHEEYMRTFTPCIGLKPNGFVSEASRETGTVIINSLALVETLMDSNRWMEMFPCIIARASTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGATSFMNCRKLPSGCVVQDMPNGYSKVTWVEHAEYEENQVHQLYRPLLSSGMGFGAARWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGTENGDATANGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01256 810 Coils Coil 169 201 - -
Trre16g01256 810 MobiDBLite consensus disorder prediction 80 125 - -
Trre16g01256 810 Pfam Homeodomain 118 173 IPR001356 GO:0003677
Trre16g01256 810 SUPERFAMILY Bet v1-like 573 803 - -
Trre16g01256 810 FunFam Homeobox-leucine zipper protein HDG1 105 191 - -
Trre16g01256 810 SMART START_1 321 545 IPR002913 GO:0008289
Trre16g01256 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 114 807 IPR042160 -
Trre16g01256 810 FunFam Homeobox-leucine zipper protein GLABRA 2 321 544 - -
Trre16g01256 810 SUPERFAMILY Homeodomain-like 103 175 IPR009057 -
Trre16g01256 810 SUPERFAMILY Bet v1-like 314 545 - -
Trre16g01256 810 Pfam START domain 321 545 IPR002913 GO:0008289
Trre16g01256 810 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Trre16g01256 810 MobiDBLite consensus disorder prediction 80 97 - -
Trre16g01256 810 Gene3D - 104 191 - -
Trre16g01256 810 SMART HOX_1 116 179 IPR001356 GO:0003677
Trre16g01256 810 ProSiteProfiles START domain profile. 312 548 IPR002913 GO:0008289
Trre16g01256 810 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Trre16g01256 810 CDD homeodomain 117 175 IPR001356 GO:0003677
Trre16g01256 810 CDD START_ArGLABRA2_like 316 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01256 Trre-Chr16 9850439 9856911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01256 1 810 Homeobox Transcription Factor Family AT3G61150 65.223 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g01256 START 1.3e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01256 K09338 - gmx:100811873 1339.32