Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01255 ATGTTCTTAATGTTGTATTTAATTGTATTATTATTTTTCTCTTGCATCTTATCATGCAAGTTTTGTAGACGTAATCGAAAGCGGAATTTCTTCGATGAAACCCAACCGTTAAATAAGTTAGATAATTTGGAGTTTCTTGAAATGCTTGGTGAAGGTGGTTTCGGTAGAGTTTTCCGATGTCATAATGTCGAAGATAATAGTGTTGTAGCCGTTAAACAAATTTGTATTCGTGATAGTGGCAATGCTGTTCCCGCTGCCATCATTCGAGAGGTCTCATTTCTTAAAGAATTACATCATCCCAACATTGTTAGGTTATTAGGTGTAATCAACAAGGACACAAGATTTGTCAACCTAGTTTTTGAGCATCTTGATTGTAATCTTTCTCAATACATTAAAGAGAATCAATGCTGCGGTTCATGTTCATCTTTTAATGATCCCATGAATATAAAGATTCTGTCTGCAGTGAATTACTGCCATTGTCACAAGATTATTCACAGAGATTTGAAACCAACTAATCTTCTAATCAATCGTTCCGAAAAGATAATCAAATTGGGTGATTTTGGTTTGGCGAGAGAGTTAGGAGATCCTGACATGAACTATACTGAGGAGGTGGCAACTTCGTGTTATAGAGCACCTGAAATATTATTTGAATGTGGTAAATATTCAACTCCGATTGATATTTGGTCTGTGGGCTGTATATTTGGCGAGATGTTACTTGGAAAACCAATAGTCGAAGGAAAATATTGGATGAATGAATTAGAAAAGATTTTTTGTATGTTCGGTACTCCAACACTAGAAACGTGGCCAGGGATTACTAAATTGTGTAGTAACATTACAACCTATCCCAAATATGAACCAATGGACCTATCAACAATATTTTATGCCGTTGGTCCAACTGGTCTTAATCTTCTAACCACAATGCTTTGCCTAGACCCAAACAAAAGAATTACTGCCGAAATTGCTCTAAAGCATGCGTACTTTAATGACTTGGTCTTGCATCCGGTCTAA 1008 0.3601 MFLMLYLIVLLFFSCILSCKFCRRNRKRNFFDETQPLNKLDNLEFLEMLGEGGFGRVFRCHNVEDNSVVAVKQICIRDSGNAVPAAIIREVSFLKELHHPNIVRLLGVINKDTRFVNLVFEHLDCNLSQYIKENQCCGSCSSFNDPMNIKILSAVNYCHCHKIIHRDLKPTNLLINRSEKIIKLGDFGLARELGDPDMNYTEEVATSCYRAPEILFECGKYSTPIDIWSVGCIFGEMLLGKPIVEGKYWMNELEKIFCMFGTPTLETWPGITKLCSNITTYPKYEPMDLSTIFYAVGPTGLNLLTTMLCLDPNKRITAEIALKHAYFNDLVLHPV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01255 335 Gene3D Transferase(Phosphotransferase) domain 1 147 332 - -
Trre16g01255 335 ProSiteProfiles Protein kinase domain profile. 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01255 335 FunFam Mitogen-activated protein kinase 145 334 - -
Trre16g01255 335 PANTHER CELL DIVISION PROTEIN KINASE 43 327 - -
Trre16g01255 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trre16g01255 335 Gene3D Phosphorylase Kinase; domain 1 23 124 - -
Trre16g01255 335 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Trre16g01255 335 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01255 335 SUPERFAMILY Protein kinase-like (PK-like) 38 331 IPR011009 -
Trre16g01255 335 SMART serkin_6 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01255 Trre-Chr16 9838143 9841837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01255 40 330 Core Cell Cycle Gene Families AT3G48750 43.771 3.25e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre16g01255 Pkinase 7.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01255 K02206 - gmx:100799974 302.367