Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01245 ATGCCTCGTGGAACACTTGAAGTTGTTTTGATCAGTGCCAAAGGTCTTGAGGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATTCTTACTTATAGGGCACAAGAGCACAAGAGTAGTGTGCAAGAAGGTGCTGGATCTAACCCTCAATGGAATGAGACTTTTCTTTTCACTGTTTCTGACAGTGCTTCTGAGCTCAATCTAAAGTTAATGGAAAAGGACAACTTTACTAATGATGATAATATTGGAGAAGCAGTAATTCCTTTAGATGCAGTTTTTGAAGAGGGTAGCCTTCCAGAGACTGCATACAATATTGTGAAGGACCAAAAGTTTTGTGGTGAGATTAAGGTGGCTCTCACTTTTACAGCTGAGAGAAATTATGATCGGGGTTACAATGAAGATGAGGAAACCACTGGTGGATGGAAAGAATCAGCTAGAGACTTTTGA 450 0.3978 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSSVQEGAGSNPQWNETFLFTVSDSASELNLKLMEKDNFTNDDNIGEAVIPLDAVFEEGSLPETAYNIVKDQKFCGEIKVALTFTAERNYDRGYNEDEETTGGWKESARDF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01245 149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Trre16g01245 149 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre16g01245 149 Gene3D C2 domain 2 124 IPR035892 -
Trre16g01245 149 PANTHER C2 DOMAIN-CONTAINING 1 136 - -
Trre16g01245 149 SMART C2_3c 5 102 IPR000008 -
Trre16g01245 149 Pfam C2 domain 4 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01245 Trre-Chr16 9752070 9754316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01245 4 94 C2H2 Transcription Factor Family AT4G21160 32.967 6.40e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01245 - - gmx:100500006 239.195