Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01211 ATGCGATGGGGAGAATTGGAAGATGACGACGGAGAGAATCTCGATTTCCTTCTACCGCCGCGTGCTGTGATAGGACCTGACGAAAACGGAATCAAGAAAGTGATTGAATACAAATTTGATGATGATGGTAATAAGGTTAAGATTACAACAACCACTCGCACTCGCAAACTCGCTAACGCGCGTATGAGTAAACGCGCCGTTGAACGTCGCTCTTTGCCTAAGTTTGGTGATGCTGTTAATGAAGACGTCGGTAGTCGTCTTACCATGGTTTCTACTGAAGAGATCGTTCTTGAACGCCCTAAGCTGATTGGTTCCCAAAAGGAGGCAATGGCCGACCCAAAAGTAGGTGCTGTTATTATGCAGTGCAGGATTTGTTTGAAGAAGGGTGAACATTGGACTGCAAAGTGTCCACTTAAGGATATCTCACAACCACCTGAGGTATTCGTTGATGATAAGCCTGTAATATTGAATGGATCTGGTTCTAATACTGGTAAGTATGTACCTCCTGGCAAGCAACCTGGTGCTGATAAGACTGGTGTGTCGCGGCCGAAAGATGAGAATTCTGTGCGGGTAACCAACCTATCGGAGGACACAACTGAGCCTGATTTGCATGAACTATTTCGTCCTTTTGGTTCTATCAGCAGAGTCTTTGTTGCTACTGATAAAAATACTCACATGAGTAGGGGTTTTGGCTTTGTCAACTTTGTTAGCAGGGAAGATGCTCAGAGAGCTATTAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAAAGTTGAATGGGCCACCCCAAGAACAACCTAA 807 0.4473 MRWGELEDDDGENLDFLLPPRAVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARMSKRAVERRSLPKFGDAVNEDVGSRLTMVSTEEIVLERPKLIGSQKEAMADPKVGAVIMQCRICLKKGEHWTAKCPLKDISQPPEVFVDDKPVILNGSGSNTGKYVPPGKQPGADKTGVSRPKDENSVRVTNLSEDTTEPDLHELFRPFGSISRVFVATDKNTHMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILKVEWATPRTT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01211 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Trre16g01211 268 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 2 267 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre16g01211 268 CDD RRM_eIF3G_like 188 263 IPR034240 -
Trre16g01211 268 PIRSF Transl_init_eIF-3_RNA-bind 1 268 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre16g01211 268 SMART rrm1_1 188 261 IPR000504 GO:0003723
Trre16g01211 268 FunFam Eukaryotic translation initiation factor 3 subunit G 155 268 - -
Trre16g01211 268 Pfam Eukaryotic translation initiation factor 3 subunit G 23 141 IPR024675 -
Trre16g01211 268 SUPERFAMILY RNA-binding domain, RBD 160 267 IPR035979 GO:0003676
Trre16g01211 268 Gene3D - 159 268 IPR012677 -
Trre16g01211 268 MobiDBLite consensus disorder prediction 159 191 - -
Trre16g01211 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 255 IPR000504 GO:0003723
Trre16g01211 268 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 11 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01211 Trre-Chr16 9589493 9591185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01211 1 268 Eukaryotic Initiation Factors Gene Family AT3G11400 58.013 1.35e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01211 K03248 - qsu:112022532 385.956