Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01210 ATGGTGAACCAGATCGAACAGCCGAAGATGCGATGGGGAGAATTGGAAGATGACGACGGAGAGAATCTCGATTTCCTTCTACCGCCGCGTGCTGTGATAGGACCTGACGAAAACGGAATCAAGAAAGTGATTGAATACAAATTTGATGATGATGGTAATAAGGTTAAGATTACAACAACCACTCGCACTCGCAAACTCGCTAACGCGCGTATGAGTAAACGCGCCGTTGAACGTCGCTCTTTGCCTAAGTTTGGTGATGCTGTTAATGAAGACGTCGGTAGTCGTCTTACCATGGTTTCTACTGAAGAGATCGTTCTTGAACGCCCTAAGCTGATTGGTTCCCAAAAGGAGGCAATGGCCGACCCAAAAGTAGGTGCTGTTATTATGCAGTGCAGGATTTGTTTGAAGAAGGGTGAACATTGGACTGCAAAGTGTCCACTTAAGGATATCTCACAACCACCTGAGGTATTCGTTGATGATAAGCCTGTAATATTGAATGGATCTGGTTCTAATACTGGTAAGTATGTACCTCCTGGCAAGCAACCTGGTGCTGATAAGACTGGTGTGTCGCGGCCGAAAGATGAGAATTCTGTGCGGGTAACCAACCTATCGGAGGACACAACTGAGCCTGATTTGCATGAACTATTTCGTCCTTTTGGTTCTATCAGCAGAGTCTTTGTTGCTACTGATAAAAATACTCACATGAGTAGGGGTTTTGGCTTTGTCAACTTTGTTAGCAGGGAAGATGCTCAGAGAGCTATTAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAAAGTTGAATGGGCCACCCCAAGAACAACCTAA 834 0.4496 MVNQIEQPKMRWGELEDDDGENLDFLLPPRAVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARMSKRAVERRSLPKFGDAVNEDVGSRLTMVSTEEIVLERPKLIGSQKEAMADPKVGAVIMQCRICLKKGEHWTAKCPLKDISQPPEVFVDDKPVILNGSGSNTGKYVPPGKQPGADKTGVSRPKDENSVRVTNLSEDTTEPDLHELFRPFGSISRVFVATDKNTHMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILKVEWATPRTT 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01210 277 PIRSF Transl_init_eIF-3_RNA-bind 1 277 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre16g01210 277 SMART rrm1_1 197 270 IPR000504 GO:0003723
Trre16g01210 277 Gene3D - 168 277 IPR012677 -
Trre16g01210 277 FunFam Eukaryotic translation initiation factor 3 subunit G 164 277 - -
Trre16g01210 277 SUPERFAMILY RNA-binding domain, RBD 169 276 IPR035979 GO:0003676
Trre16g01210 277 Pfam Eukaryotic translation initiation factor 3 subunit G 32 150 IPR024675 -
Trre16g01210 277 MobiDBLite consensus disorder prediction 168 200 - -
Trre16g01210 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 264 IPR000504 GO:0003723
Trre16g01210 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Trre16g01210 277 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 276 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre16g01210 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 16 273 - -
Trre16g01210 277 CDD RRM_eIF3G_like 197 272 IPR034240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01210 Trre-Chr16 9589466 9591185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01210 3 277 Eukaryotic Initiation Factors Gene Family AT3G11400 57.367 1.78e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01210 K03248 - qsu:112022532 390.963