Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01196 ATGGGGTTGAAGAAAGGTCCATGGACAACTGAAGAAGATGAAATTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCGTCGTTGTGGTAAGAGTTGCCGACTAAGATGGACGAACTACCTGAAACCTGATATTAAACGCGGTCCCTTTACACCTCAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATAGCTTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCAAATTACTATCCAATTTCAAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCTAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACTCATGTTTATTCAACAATAACAACATTACTTCTTTTGCAAGTAACAAATCTGATTCTGATTCTGACTATTTCCTTAAGATATGGAACTCCGAAGTTGGACAATCTTTTCGCTCAGTTCGTAAATCAGATGACGGTGACGACGATGATGATAAAACTAGGTGCATAAGTTCCATGTCTCAAGAAGGGTCATCTTGTAATAATACAAAATGTGGATCAGTTTCTGCTACTACGACTATAACAGATTTTGCTTCATCAACTCTTGCAAGCAATGTGAAGGAAGATTTTGAATGGAGAAACTATAAATCATTTGATATTGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTCTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATAA 897 0.3868 MGLKKGPWTTEEDEILVNFIKKNGGHGSWRSLPKLAGLRRCGKSCRLRWTNYLKPDIKRGPFTPQEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSNYYPISKSNSSIATRHMAQWESARLEAEARLSKDSCLFNNNNITSFASNKSDSDSDYFLKIWNSEVGQSFRSVRKSDDGDDDDDKTRCISSMSQEGSSCNNTKCGSVSATTTITDFASSTLASNVKEDFEWRNYKSFDIGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01196 298 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Trre16g01196 298 CDD SANT 61 104 IPR001005 -
Trre16g01196 298 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Trre16g01196 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Trre16g01196 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Trre16g01196 298 Gene3D - 2 59 - -
Trre16g01196 298 FunFam MYB-related transcription factor 4 58 - -
Trre16g01196 298 FunFam MYB transcription factor 61 108 - -
Trre16g01196 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Trre16g01196 298 MobiDBLite consensus disorder prediction 196 227 - -
Trre16g01196 298 MobiDBLite consensus disorder prediction 196 213 - -
Trre16g01196 298 CDD SANT 7 53 IPR001005 -
Trre16g01196 298 Gene3D - 61 108 - -
Trre16g01196 298 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Trre16g01196 298 Pfam Myb-like DNA-binding domain 5 53 IPR001005 -
Trre16g01196 298 SUPERFAMILY Homeodomain-like 1 100 IPR009057 -
Trre16g01196 298 SMART sant 4 55 IPR001005 -
Trre16g01196 298 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01196 Trre-Chr16 9474448 9477156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01196 1 298 MYB Transcription Factor Family AT3G61250 59.000 2.16e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01196 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01196 K09422 - gmx:100800408 375.17